Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS12700 and LU632_RS12705 overlap by 2 nucleotides LU632_RS12705 and LU632_RS12710 are separated by 102 nucleotides LU632_RS12710 and LU632_RS12715 are separated by 78 nucleotides
LU632_RS12700: LU632_RS12700 - IS3 family transposase, at 2,415,254 to 2,416,428
_RS12700
LU632_RS12705: LU632_RS12705 - IS630 family transposase, at 2,416,427 to 2,416,531
_RS12705
LU632_RS12710: LU632_RS12710 - DUF2498 family protein, at 2,416,634 to 2,416,726
_RS12710
LU632_RS12715: LU632_RS12715 - IS481 family transposase, at 2,416,805 to 2,417,843
_RS12715
Position (kb)
2416
2417 Strain fitness (log2 ratio)
-1
0
1 at 2416.433 kb on + strand at 2416.433 kb on + strand at 2416.438 kb on + strand, within LU632_RS12705 at 2416.520 kb on + strand, within LU632_RS12705 at 2416.581 kb on - strand at 2416.612 kb on + strand at 2416.615 kb on + strand at 2416.628 kb on + strand at 2416.628 kb on + strand at 2416.628 kb on + strand at 2416.629 kb on - strand at 2416.629 kb on - strand at 2416.660 kb on + strand, within LU632_RS12710
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 2,416,433 + -0.6 2,416,433 + -1.5 2,416,438 + LU632_RS12705 0.10 +0.5 2,416,520 + LU632_RS12705 0.89 -0.1 2,416,581 - -0.7 2,416,612 + +0.6 2,416,615 + -0.8 2,416,628 + -1.0 2,416,628 + -0.1 2,416,628 + -0.0 2,416,629 - -0.2 2,416,629 - +1.1 2,416,660 + LU632_RS12710 0.28 -1.0
Or see this region's nucleotide sequence