Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08160

Experiment: survival 4C, 24 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnrdA and ubiG are separated by 504 nucleotidesubiG and gyrA are separated by 192 nucleotides LU632_RS08155: nrdA - ribonucleoside-diphosphate reductase subunit alpha, at 1,526,956 to 1,529,241 nrdA LU632_RS08160: ubiG - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 1,529,746 to 1,530,474 ubiG LU632_RS08165: gyrA - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 1,530,667 to 1,533,306 gyrA Position (kb) 1529 1530 1531Strain fitness (log2 ratio) -1 0 1at 1529.342 kb on - strandat 1529.354 kb on - strandat 1529.497 kb on + strandat 1529.498 kb on - strandat 1529.610 kb on - strandat 1529.616 kb on + strandat 1529.616 kb on + strandat 1529.640 kb on + strandat 1529.640 kb on + strandat 1530.567 kb on + strandat 1530.618 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction survival 4C, 24 hrs
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1,529,342 - -0.2
1,529,354 - +0.8
1,529,497 + +0.4
1,529,498 - -0.4
1,529,610 - -0.1
1,529,616 + +0.6
1,529,616 + +0.0
1,529,640 + +1.2
1,529,640 + -0.2
1,530,567 + +0.9
1,530,618 + +1.7

Or see this region's nucleotide sequence