Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06260

Experiment: survival 4C, 24 hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS06255 and LU632_RS06260 are separated by 50 nucleotidesLU632_RS06260 and rlmM overlap by 8 nucleotides LU632_RS06255: LU632_RS06255 - transcriptional regulator GcvA, at 1,197,720 to 1,198,637 _RS06255 LU632_RS06260: LU632_RS06260 - DUF423 domain-containing protein, at 1,198,688 to 1,199,083 _RS06260 LU632_RS06265: rlmM - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 1,199,076 to 1,200,176 rlmM Position (kb) 1198 1199 1200Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1197.869 kb on + strand, within LU632_RS06255at 1197.869 kb on + strand, within LU632_RS06255at 1197.874 kb on + strand, within LU632_RS06255at 1198.067 kb on + strand, within LU632_RS06255at 1198.169 kb on + strand, within LU632_RS06255at 1198.200 kb on + strand, within LU632_RS06255at 1198.200 kb on + strand, within LU632_RS06255at 1198.223 kb on - strand, within LU632_RS06255at 1198.287 kb on - strand, within LU632_RS06255at 1198.326 kb on + strand, within LU632_RS06255at 1198.326 kb on + strand, within LU632_RS06255at 1198.326 kb on + strand, within LU632_RS06255at 1198.326 kb on + strand, within LU632_RS06255at 1198.327 kb on - strand, within LU632_RS06255at 1198.352 kb on + strand, within LU632_RS06255at 1198.353 kb on - strand, within LU632_RS06255at 1198.356 kb on - strand, within LU632_RS06255at 1198.440 kb on - strand, within LU632_RS06255at 1198.440 kb on - strand, within LU632_RS06255at 1198.440 kb on - strand, within LU632_RS06255at 1198.490 kb on + strand, within LU632_RS06255at 1198.491 kb on - strand, within LU632_RS06255at 1198.491 kb on - strand, within LU632_RS06255at 1198.711 kb on - strandat 1198.775 kb on - strand, within LU632_RS06260at 1198.775 kb on - strand, within LU632_RS06260at 1198.837 kb on + strand, within LU632_RS06260at 1198.872 kb on + strand, within LU632_RS06260at 1198.873 kb on - strand, within LU632_RS06260at 1198.873 kb on - strand, within LU632_RS06260at 1198.929 kb on + strand, within LU632_RS06260at 1198.930 kb on - strand, within LU632_RS06260at 1198.950 kb on - strand, within LU632_RS06260at 1199.135 kb on + strandat 1199.196 kb on + strand, within rlmMat 1199.197 kb on - strand, within rlmMat 1199.201 kb on - strand, within rlmMat 1199.201 kb on - strand, within rlmMat 1199.201 kb on - strand, within rlmMat 1199.204 kb on - strand, within rlmMat 1199.204 kb on - strand, within rlmMat 1199.489 kb on + strand, within rlmMat 1199.550 kb on + strand, within rlmMat 1199.577 kb on - strand, within rlmMat 1199.715 kb on + strand, within rlmMat 1199.716 kb on - strand, within rlmMat 1199.716 kb on - strand, within rlmMat 1199.754 kb on + strand, within rlmMat 1199.774 kb on + strand, within rlmMat 1199.774 kb on + strand, within rlmMat 1199.775 kb on - strand, within rlmMat 1199.775 kb on - strand, within rlmMat 1199.862 kb on - strand, within rlmMat 1199.862 kb on - strand, within rlmMat 1199.862 kb on - strand, within rlmMat 1199.865 kb on + strand, within rlmMat 1199.866 kb on - strand, within rlmMat 1199.885 kb on + strand, within rlmMat 1199.885 kb on + strand, within rlmMat 1199.886 kb on - strand, within rlmMat 1199.886 kb on - strand, within rlmMat 1199.978 kb on + strand, within rlmMat 1199.979 kb on - strand, within rlmM

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction survival 4C, 24 hrs
remove
1,197,869 + LU632_RS06255 0.16 -0.2
1,197,869 + LU632_RS06255 0.16 -1.8
1,197,874 + LU632_RS06255 0.17 -1.8
1,198,067 + LU632_RS06255 0.38 -0.8
1,198,169 + LU632_RS06255 0.49 -1.2
1,198,200 + LU632_RS06255 0.52 -2.8
1,198,200 + LU632_RS06255 0.52 -1.9
1,198,223 - LU632_RS06255 0.55 -0.4
1,198,287 - LU632_RS06255 0.62 -1.2
1,198,326 + LU632_RS06255 0.66 +0.2
1,198,326 + LU632_RS06255 0.66 -0.9
1,198,326 + LU632_RS06255 0.66 -0.2
1,198,326 + LU632_RS06255 0.66 -0.2
1,198,327 - LU632_RS06255 0.66 -1.2
1,198,352 + LU632_RS06255 0.69 -0.1
1,198,353 - LU632_RS06255 0.69 -0.8
1,198,356 - LU632_RS06255 0.69 +0.8
1,198,440 - LU632_RS06255 0.78 -1.2
1,198,440 - LU632_RS06255 0.78 -1.1
1,198,440 - LU632_RS06255 0.78 +0.6
1,198,490 + LU632_RS06255 0.84 -0.8
1,198,491 - LU632_RS06255 0.84 +0.8
1,198,491 - LU632_RS06255 0.84 -2.2
1,198,711 - -0.5
1,198,775 - LU632_RS06260 0.22 -0.2
1,198,775 - LU632_RS06260 0.22 +0.8
1,198,837 + LU632_RS06260 0.38 -1.5
1,198,872 + LU632_RS06260 0.46 -1.4
1,198,873 - LU632_RS06260 0.47 -0.2
1,198,873 - LU632_RS06260 0.47 -2.0
1,198,929 + LU632_RS06260 0.61 -2.8
1,198,930 - LU632_RS06260 0.61 +1.4
1,198,950 - LU632_RS06260 0.66 -1.4
1,199,135 + +2.6
1,199,196 + rlmM LU632_RS06265 0.11 +1.1
1,199,197 - rlmM LU632_RS06265 0.11 +0.1
1,199,201 - rlmM LU632_RS06265 0.11 -0.6
1,199,201 - rlmM LU632_RS06265 0.11 -1.8
1,199,201 - rlmM LU632_RS06265 0.11 -1.0
1,199,204 - rlmM LU632_RS06265 0.12 +1.4
1,199,204 - rlmM LU632_RS06265 0.12 +0.4
1,199,489 + rlmM LU632_RS06265 0.38 -1.2
1,199,550 + rlmM LU632_RS06265 0.43 -1.2
1,199,577 - rlmM LU632_RS06265 0.46 +0.1
1,199,715 + rlmM LU632_RS06265 0.58 +0.3
1,199,716 - rlmM LU632_RS06265 0.58 -1.2
1,199,716 - rlmM LU632_RS06265 0.58 -1.0
1,199,754 + rlmM LU632_RS06265 0.62 -0.1
1,199,774 + rlmM LU632_RS06265 0.63 -0.8
1,199,774 + rlmM LU632_RS06265 0.63 -0.6
1,199,775 - rlmM LU632_RS06265 0.63 -0.0
1,199,775 - rlmM LU632_RS06265 0.63 +0.8
1,199,862 - rlmM LU632_RS06265 0.71 -0.7
1,199,862 - rlmM LU632_RS06265 0.71 -0.1
1,199,862 - rlmM LU632_RS06265 0.71 -1.8
1,199,865 + rlmM LU632_RS06265 0.72 -1.4
1,199,866 - rlmM LU632_RS06265 0.72 -0.3
1,199,885 + rlmM LU632_RS06265 0.73 +0.8
1,199,885 + rlmM LU632_RS06265 0.73 -0.2
1,199,886 - rlmM LU632_RS06265 0.74 +0.3
1,199,886 - rlmM LU632_RS06265 0.74 -0.6
1,199,978 + rlmM LU632_RS06265 0.82 +0.4
1,199,979 - rlmM LU632_RS06265 0.82 +1.4

Or see this region's nucleotide sequence