Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS06100 and rppH are separated by 157 nucleotides rppH and ptsP are separated by 12 nucleotides ptsP and lgt are separated by 181 nucleotides
LU632_RS06100: LU632_RS06100 - hypothetical protein, at 1,162,694 to 1,162,906
_RS06100
LU632_RS06105: rppH - RNA pyrophosphohydrolase, at 1,163,064 to 1,163,588
rppH
LU632_RS06110: ptsP - phosphoenolpyruvate--protein phosphotransferase, at 1,163,601 to 1,165,847
ptsP
LU632_RS06115: lgt - prolipoprotein diacylglyceryl transferase, at 1,166,029 to 1,166,910
lgt
Position (kb) 1163
1164
1165
1166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1162.628 kb on - strand at 1162.746 kb on - strand, within LU632_RS06100 at 1163.547 kb on - strand at 1163.586 kb on + strand at 1163.600 kb on + strand at 1163.600 kb on + strand at 1163.601 kb on - strand at 1163.601 kb on - strand at 1163.601 kb on - strand at 1163.748 kb on + strand at 1163.752 kb on - strand at 1163.888 kb on + strand, within ptsP at 1163.888 kb on + strand, within ptsP at 1163.889 kb on - strand, within ptsP at 1163.889 kb on - strand, within ptsP at 1163.889 kb on - strand, within ptsP at 1163.892 kb on + strand, within ptsP at 1163.892 kb on - strand, within ptsP at 1163.893 kb on - strand, within ptsP at 1163.893 kb on - strand, within ptsP at 1163.893 kb on - strand, within ptsP at 1163.945 kb on + strand, within ptsP at 1164.247 kb on + strand, within ptsP at 1164.248 kb on - strand, within ptsP at 1164.333 kb on + strand, within ptsP at 1164.334 kb on - strand, within ptsP at 1164.334 kb on - strand, within ptsP at 1164.346 kb on + strand, within ptsP at 1164.346 kb on + strand, within ptsP at 1164.347 kb on + strand, within ptsP at 1164.375 kb on + strand, within ptsP at 1164.465 kb on - strand, within ptsP at 1164.468 kb on + strand, within ptsP at 1164.468 kb on + strand, within ptsP at 1164.469 kb on - strand, within ptsP at 1164.469 kb on - strand, within ptsP at 1164.548 kb on + strand, within ptsP at 1164.637 kb on + strand, within ptsP at 1164.814 kb on - strand, within ptsP at 1164.848 kb on + strand, within ptsP at 1164.981 kb on + strand, within ptsP at 1165.002 kb on - strand, within ptsP at 1165.128 kb on + strand, within ptsP at 1165.128 kb on + strand, within ptsP at 1165.128 kb on + strand, within ptsP at 1165.129 kb on - strand, within ptsP at 1165.129 kb on - strand, within ptsP at 1165.129 kb on - strand, within ptsP at 1165.129 kb on - strand, within ptsP at 1165.130 kb on + strand, within ptsP at 1165.130 kb on + strand, within ptsP at 1165.131 kb on - strand, within ptsP at 1165.353 kb on + strand, within ptsP at 1165.355 kb on + strand, within ptsP at 1165.355 kb on + strand, within ptsP at 1165.355 kb on + strand, within ptsP at 1165.355 kb on - strand, within ptsP at 1165.382 kb on + strand, within ptsP at 1165.382 kb on + strand, within ptsP at 1165.409 kb on + strand, within ptsP at 1165.466 kb on + strand, within ptsP at 1165.473 kb on + strand, within ptsP at 1165.473 kb on + strand, within ptsP at 1165.553 kb on - strand, within ptsP at 1165.553 kb on - strand, within ptsP at 1165.642 kb on + strand at 1165.667 kb on - strand at 1165.667 kb on - strand at 1165.701 kb on + strand at 1165.701 kb on + strand at 1165.701 kb on + strand at 1165.756 kb on + strand at 1165.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 1,162,628 - +0.6 1,162,746 - LU632_RS06100 0.24 -1.0 1,163,547 - -0.8 1,163,586 + -0.5 1,163,600 + -1.2 1,163,600 + +0.4 1,163,601 - -0.2 1,163,601 - -0.6 1,163,601 - -0.2 1,163,748 + -1.8 1,163,752 - -0.2 1,163,888 + ptsP LU632_RS06110 0.13 -0.5 1,163,888 + ptsP LU632_RS06110 0.13 +0.4 1,163,889 - ptsP LU632_RS06110 0.13 -0.6 1,163,889 - ptsP LU632_RS06110 0.13 -0.2 1,163,889 - ptsP LU632_RS06110 0.13 -0.2 1,163,892 + ptsP LU632_RS06110 0.13 -1.8 1,163,892 - ptsP LU632_RS06110 0.13 -1.1 1,163,893 - ptsP LU632_RS06110 0.13 -0.7 1,163,893 - ptsP LU632_RS06110 0.13 -1.4 1,163,893 - ptsP LU632_RS06110 0.13 -1.5 1,163,945 + ptsP LU632_RS06110 0.15 -1.2 1,164,247 + ptsP LU632_RS06110 0.29 -1.8 1,164,248 - ptsP LU632_RS06110 0.29 -1.0 1,164,333 + ptsP LU632_RS06110 0.33 -0.8 1,164,334 - ptsP LU632_RS06110 0.33 -1.2 1,164,334 - ptsP LU632_RS06110 0.33 -1.2 1,164,346 + ptsP LU632_RS06110 0.33 -1.0 1,164,346 + ptsP LU632_RS06110 0.33 -1.2 1,164,347 + ptsP LU632_RS06110 0.33 -0.2 1,164,375 + ptsP LU632_RS06110 0.34 -0.5 1,164,465 - ptsP LU632_RS06110 0.38 -0.2 1,164,468 + ptsP LU632_RS06110 0.39 -0.9 1,164,468 + ptsP LU632_RS06110 0.39 +0.3 1,164,469 - ptsP LU632_RS06110 0.39 -3.0 1,164,469 - ptsP LU632_RS06110 0.39 -1.6 1,164,548 + ptsP LU632_RS06110 0.42 -0.5 1,164,637 + ptsP LU632_RS06110 0.46 -2.0 1,164,814 - ptsP LU632_RS06110 0.54 +2.4 1,164,848 + ptsP LU632_RS06110 0.55 -0.2 1,164,981 + ptsP LU632_RS06110 0.61 -0.2 1,165,002 - ptsP LU632_RS06110 0.62 -1.3 1,165,128 + ptsP LU632_RS06110 0.68 -0.7 1,165,128 + ptsP LU632_RS06110 0.68 -2.8 1,165,128 + ptsP LU632_RS06110 0.68 -2.2 1,165,129 - ptsP LU632_RS06110 0.68 -1.0 1,165,129 - ptsP LU632_RS06110 0.68 +0.8 1,165,129 - ptsP LU632_RS06110 0.68 -0.2 1,165,129 - ptsP LU632_RS06110 0.68 -0.7 1,165,130 + ptsP LU632_RS06110 0.68 +1.4 1,165,130 + ptsP LU632_RS06110 0.68 -2.8 1,165,131 - ptsP LU632_RS06110 0.68 +1.4 1,165,353 + ptsP LU632_RS06110 0.78 -0.6 1,165,355 + ptsP LU632_RS06110 0.78 -0.2 1,165,355 + ptsP LU632_RS06110 0.78 +0.8 1,165,355 + ptsP LU632_RS06110 0.78 -1.2 1,165,355 - ptsP LU632_RS06110 0.78 +1.6 1,165,382 + ptsP LU632_RS06110 0.79 -1.3 1,165,382 + ptsP LU632_RS06110 0.79 -0.0 1,165,409 + ptsP LU632_RS06110 0.80 -1.8 1,165,466 + ptsP LU632_RS06110 0.83 -0.8 1,165,473 + ptsP LU632_RS06110 0.83 -1.2 1,165,473 + ptsP LU632_RS06110 0.83 -0.8 1,165,553 - ptsP LU632_RS06110 0.87 -0.2 1,165,553 - ptsP LU632_RS06110 0.87 +0.8 1,165,642 + -1.5 1,165,667 - -0.9 1,165,667 - -2.0 1,165,701 + -1.5 1,165,701 + -3.2 1,165,701 + -1.1 1,165,756 + -1.4 1,165,892 + +1.1
Or see this region's nucleotide sequence