Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05090

Experiment: survival 4C, 24 hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS05080 and LU632_RS05085 are separated by 103 nucleotidesLU632_RS05085 and LU632_RS05090 are separated by 143 nucleotidesLU632_RS05090 and LU632_RS05095 are separated by 2 nucleotides LU632_RS05080: LU632_RS05080 - IS91 family transposase, at 989,249 to 990,280 _RS05080 LU632_RS05085: LU632_RS05085 - GNAT family N-acetyltransferase, at 990,384 to 990,761 _RS05085 LU632_RS05090: LU632_RS05090 - contact-dependent growth inhibition system immunity protein, at 990,905 to 991,225 _RS05090 LU632_RS05095: LU632_RS05095 - hypothetical protein, at 991,228 to 992,061 _RS05095 Position (kb) 990 991 992Strain fitness (log2 ratio) -2 -1 0 1 2at 990.441 kb on - strand, within LU632_RS05085at 990.624 kb on - strand, within LU632_RS05085at 990.625 kb on + strand, within LU632_RS05085at 990.625 kb on + strand, within LU632_RS05085at 990.625 kb on + strand, within LU632_RS05085at 990.625 kb on + strand, within LU632_RS05085at 990.625 kb on + strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.702 kb on - strand, within LU632_RS05085at 990.738 kb on - strandat 990.738 kb on - strandat 990.744 kb on - strandat 990.747 kb on + strandat 990.748 kb on - strandat 990.748 kb on - strandat 990.748 kb on - strandat 990.748 kb on - strandat 990.749 kb on + strandat 990.755 kb on + strandat 990.916 kb on + strandat 990.917 kb on - strandat 990.922 kb on + strandat 991.011 kb on + strand, within LU632_RS05090at 991.011 kb on + strand, within LU632_RS05090at 991.011 kb on + strand, within LU632_RS05090at 991.012 kb on - strand, within LU632_RS05090at 991.014 kb on + strand, within LU632_RS05090at 991.015 kb on - strand, within LU632_RS05090at 991.025 kb on + strand, within LU632_RS05090at 991.113 kb on + strand, within LU632_RS05090at 991.113 kb on + strand, within LU632_RS05090at 991.114 kb on - strand, within LU632_RS05090at 991.117 kb on + strand, within LU632_RS05090at 991.117 kb on + strand, within LU632_RS05090at 991.117 kb on + strand, within LU632_RS05090at 991.118 kb on - strand, within LU632_RS05090at 991.118 kb on - strand, within LU632_RS05090at 991.122 kb on - strand, within LU632_RS05090at 991.122 kb on - strand, within LU632_RS05090at 991.135 kb on + strand, within LU632_RS05090at 991.225 kb on + strandat 991.225 kb on + strandat 991.229 kb on + strandat 991.229 kb on + strandat 991.230 kb on - strandat 991.255 kb on - strandat 991.255 kb on - strandat 991.257 kb on - strandat 991.257 kb on - strandat 991.257 kb on - strandat 991.307 kb on + strandat 991.407 kb on + strand, within LU632_RS05095at 991.437 kb on + strand, within LU632_RS05095at 991.437 kb on + strand, within LU632_RS05095at 991.437 kb on + strand, within LU632_RS05095at 991.437 kb on + strand, within LU632_RS05095at 991.437 kb on + strand, within LU632_RS05095at 991.438 kb on - strand, within LU632_RS05095at 991.438 kb on - strand, within LU632_RS05095at 991.438 kb on - strand, within LU632_RS05095at 991.438 kb on - strand, within LU632_RS05095at 991.439 kb on + strand, within LU632_RS05095at 991.440 kb on - strand, within LU632_RS05095at 991.440 kb on - strand, within LU632_RS05095at 991.440 kb on - strand, within LU632_RS05095at 991.650 kb on + strand, within LU632_RS05095at 991.650 kb on + strand, within LU632_RS05095at 991.767 kb on + strand, within LU632_RS05095at 991.768 kb on - strand, within LU632_RS05095at 991.770 kb on + strand, within LU632_RS05095at 991.770 kb on + strand, within LU632_RS05095at 991.770 kb on + strand, within LU632_RS05095at 991.771 kb on - strand, within LU632_RS05095at 991.772 kb on + strand, within LU632_RS05095at 991.772 kb on + strand, within LU632_RS05095at 991.772 kb on + strand, within LU632_RS05095at 991.772 kb on + strand, within LU632_RS05095at 991.772 kb on + strand, within LU632_RS05095at 991.772 kb on + strand, within LU632_RS05095at 991.773 kb on - strand, within LU632_RS05095at 991.773 kb on - strand, within LU632_RS05095at 991.776 kb on + strand, within LU632_RS05095at 991.776 kb on + strand, within LU632_RS05095at 991.776 kb on + strand, within LU632_RS05095at 991.776 kb on + strand, within LU632_RS05095at 991.776 kb on + strand, within LU632_RS05095at 991.777 kb on - strand, within LU632_RS05095at 991.777 kb on - strand, within LU632_RS05095at 991.788 kb on + strand, within LU632_RS05095at 991.855 kb on + strand, within LU632_RS05095at 991.856 kb on - strand, within LU632_RS05095at 991.856 kb on - strand, within LU632_RS05095at 991.869 kb on + strand, within LU632_RS05095at 991.986 kb on + strandat 991.989 kb on + strandat 991.989 kb on + strandat 991.990 kb on - strandat 991.990 kb on - strandat 991.990 kb on - strandat 992.049 kb on + strandat 992.050 kb on - strandat 992.050 kb on - strandat 992.052 kb on + strandat 992.052 kb on + strandat 992.068 kb on + strandat 992.090 kb on + strandat 992.091 kb on - strandat 992.091 kb on - strandat 992.092 kb on + strandat 992.092 kb on + strandat 992.093 kb on - strandat 992.093 kb on - strandat 992.093 kb on - strandat 992.093 kb on - strandat 992.093 kb on - strandat 992.146 kb on + strandat 992.180 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction survival 4C, 24 hrs
remove
990,441 - LU632_RS05085 0.15 +0.3
990,624 - LU632_RS05085 0.63 -0.2
990,625 + LU632_RS05085 0.64 +0.1
990,625 + LU632_RS05085 0.64 -2.5
990,625 + LU632_RS05085 0.64 +0.2
990,625 + LU632_RS05085 0.64 +0.5
990,625 + LU632_RS05085 0.64 +1.4
990,626 - LU632_RS05085 0.64 -0.6
990,626 - LU632_RS05085 0.64 +0.4
990,626 - LU632_RS05085 0.64 +0.8
990,626 - LU632_RS05085 0.64 +0.6
990,626 - LU632_RS05085 0.64 +0.6
990,626 - LU632_RS05085 0.64 -0.9
990,626 - LU632_RS05085 0.64 +0.7
990,626 - LU632_RS05085 0.64 +0.9
990,626 - LU632_RS05085 0.64 +0.5
990,702 - LU632_RS05085 0.84 +1.4
990,738 - +2.4
990,738 - +1.4
990,744 - +0.9
990,747 + +0.9
990,748 - +0.1
990,748 - -0.4
990,748 - +0.1
990,748 - -0.6
990,749 + +0.1
990,755 + -0.6
990,916 + +0.3
990,917 - -0.0
990,922 + -0.5
991,011 + LU632_RS05090 0.33 -1.0
991,011 + LU632_RS05090 0.33 -1.1
991,011 + LU632_RS05090 0.33 -1.4
991,012 - LU632_RS05090 0.33 -1.3
991,014 + LU632_RS05090 0.34 -0.8
991,015 - LU632_RS05090 0.34 -0.8
991,025 + LU632_RS05090 0.37 -2.2
991,113 + LU632_RS05090 0.65 -0.2
991,113 + LU632_RS05090 0.65 -1.1
991,114 - LU632_RS05090 0.65 +0.1
991,117 + LU632_RS05090 0.66 -1.8
991,117 + LU632_RS05090 0.66 +0.8
991,117 + LU632_RS05090 0.66 +1.5
991,118 - LU632_RS05090 0.66 -1.0
991,118 - LU632_RS05090 0.66 -0.2
991,122 - LU632_RS05090 0.68 +0.8
991,122 - LU632_RS05090 0.68 -1.2
991,135 + LU632_RS05090 0.72 -1.2
991,225 + -0.2
991,225 + +0.4
991,229 + -1.6
991,229 + -0.5
991,230 - +1.0
991,255 - +2.1
991,255 - -0.2
991,257 - +0.7
991,257 - -0.8
991,257 - -0.8
991,307 + -0.2
991,407 + LU632_RS05095 0.21 -0.1
991,437 + LU632_RS05095 0.25 -0.2
991,437 + LU632_RS05095 0.25 -0.3
991,437 + LU632_RS05095 0.25 -2.0
991,437 + LU632_RS05095 0.25 +1.2
991,437 + LU632_RS05095 0.25 -0.8
991,438 - LU632_RS05095 0.25 -0.6
991,438 - LU632_RS05095 0.25 +0.2
991,438 - LU632_RS05095 0.25 -0.8
991,438 - LU632_RS05095 0.25 +0.3
991,439 + LU632_RS05095 0.25 -0.6
991,440 - LU632_RS05095 0.25 +0.4
991,440 - LU632_RS05095 0.25 +0.4
991,440 - LU632_RS05095 0.25 -0.0
991,650 + LU632_RS05095 0.51 +0.3
991,650 + LU632_RS05095 0.51 -0.2
991,767 + LU632_RS05095 0.65 +0.5
991,768 - LU632_RS05095 0.65 +0.2
991,770 + LU632_RS05095 0.65 -0.8
991,770 + LU632_RS05095 0.65 -0.4
991,770 + LU632_RS05095 0.65 +0.8
991,771 - LU632_RS05095 0.65 +0.7
991,772 + LU632_RS05095 0.65 +0.2
991,772 + LU632_RS05095 0.65 +0.8
991,772 + LU632_RS05095 0.65 +0.2
991,772 + LU632_RS05095 0.65 -0.2
991,772 + LU632_RS05095 0.65 +0.7
991,772 + LU632_RS05095 0.65 -0.2
991,773 - LU632_RS05095 0.65 +0.8
991,773 - LU632_RS05095 0.65 -0.2
991,776 + LU632_RS05095 0.66 -0.2
991,776 + LU632_RS05095 0.66 +1.6
991,776 + LU632_RS05095 0.66 +1.4
991,776 + LU632_RS05095 0.66 -0.2
991,776 + LU632_RS05095 0.66 +0.7
991,777 - LU632_RS05095 0.66 -0.2
991,777 - LU632_RS05095 0.66 -0.5
991,788 + LU632_RS05095 0.67 -1.2
991,855 + LU632_RS05095 0.75 +0.6
991,856 - LU632_RS05095 0.75 -0.4
991,856 - LU632_RS05095 0.75 +0.1
991,869 + LU632_RS05095 0.77 +0.8
991,986 + +0.8
991,989 + +0.8
991,989 + +0.0
991,990 - -0.2
991,990 - +0.8
991,990 - +0.4
992,049 + -0.5
992,050 - +0.0
992,050 - -0.9
992,052 + +0.4
992,052 + -0.4
992,068 + +1.1
992,090 + -0.2
992,091 - +0.3
992,091 - +1.4
992,092 + -1.4
992,092 + +1.2
992,093 - -0.1
992,093 - +0.5
992,093 - -2.0
992,093 - +0.3
992,093 - +0.1
992,146 + +0.8
992,180 + +0.0

Or see this region's nucleotide sequence