Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04590 and LU632_RS04595 are separated by 190 nucleotides LU632_RS04595 and LU632_RS04600 overlap by 16 nucleotides LU632_RS04600 and LU632_RS04605 are separated by 160 nucleotides
LU632_RS04590: LU632_RS04590 - IS481 family transposase, at 898,393 to 899,406
_RS04590
LU632_RS04595: LU632_RS04595 - hypothetical protein, at 899,597 to 899,749
_RS04595
LU632_RS04600: LU632_RS04600 - hypothetical protein, at 899,734 to 900,135
_RS04600
LU632_RS04605: LU632_RS04605 - hypothetical protein, at 900,296 to 901,408
_RS04605
Position (kb) 899
900 Strain fitness (log2 ratio) -2
-1
0
1 at 899.511 kb on + strand at 899.567 kb on + strand at 899.623 kb on - strand, within LU632_RS04595 at 899.642 kb on + strand, within LU632_RS04595 at 899.684 kb on - strand, within LU632_RS04595 at 899.708 kb on + strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.768 kb on + strand at 899.769 kb on - strand at 899.769 kb on - strand at 899.842 kb on - strand, within LU632_RS04600 at 900.140 kb on + strand at 900.140 kb on + strand at 900.143 kb on - strand at 900.196 kb on + strand at 900.196 kb on + strand at 900.197 kb on - strand at 900.197 kb on - strand at 900.200 kb on + strand at 900.200 kb on + strand at 900.201 kb on - strand at 900.201 kb on - strand at 900.557 kb on - strand, within LU632_RS04605 at 900.711 kb on - strand, within LU632_RS04605
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 899,511 + -0.6 899,567 + -1.8 899,623 - LU632_RS04595 0.17 -0.7 899,642 + LU632_RS04595 0.29 +0.1 899,684 - LU632_RS04595 0.57 -0.4 899,708 + LU632_RS04595 0.73 +0.8 899,709 - LU632_RS04595 0.73 -0.5 899,709 - LU632_RS04595 0.73 +0.4 899,709 - LU632_RS04595 0.73 +0.0 899,709 - LU632_RS04595 0.73 -0.6 899,709 - LU632_RS04595 0.73 -1.2 899,768 + +0.4 899,769 - -1.0 899,769 - -0.8 899,842 - LU632_RS04600 0.27 +0.8 900,140 + +0.0 900,140 + -0.4 900,143 - +0.6 900,196 + -0.5 900,196 + +0.2 900,197 - -0.2 900,197 - -0.5 900,200 + -0.8 900,200 + -1.8 900,201 - -1.3 900,201 - -2.0 900,557 - LU632_RS04605 0.23 -1.5 900,711 - LU632_RS04605 0.37 -0.5
Or see this region's nucleotide sequence