Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04170 and katB are separated by 61 nucleotides katB and LU632_RS04180 are separated by 362 nucleotides LU632_RS04180 and LU632_RS04185 are separated by 350 nucleotides
LU632_RS04170: LU632_RS04170 - ankyrin repeat domain-containing protein, at 827,875 to 828,414
_RS04170
LU632_RS04175: katB - catalase, at 828,476 to 829,942
katB
LU632_RS04180: LU632_RS04180 - hypothetical protein, at 830,305 to 830,469
_RS04180
LU632_RS04185: LU632_RS04185 - transglycosylase SLT domain-containing protein, at 830,820 to 831,302
_RS04185
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 827.503 kb on - strand at 827.541 kb on + strand at 827.556 kb on + strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.558 kb on + strand at 827.559 kb on - strand at 827.574 kb on + strand at 827.575 kb on - strand at 827.610 kb on - strand at 827.610 kb on - strand at 827.637 kb on + strand at 827.638 kb on - strand at 827.698 kb on + strand at 827.699 kb on - strand at 827.709 kb on - strand at 827.709 kb on - strand at 827.826 kb on + strand at 827.827 kb on - strand at 827.827 kb on - strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.830 kb on - strand at 827.830 kb on - strand at 827.834 kb on - strand at 827.834 kb on - strand at 827.845 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.848 kb on - strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.917 kb on - strand at 827.917 kb on - strand at 827.920 kb on - strand at 827.920 kb on - strand at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.003 kb on - strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.246 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.312 kb on + strand, within LU632_RS04170 at 828.313 kb on - strand, within LU632_RS04170 at 828.389 kb on + strand at 828.390 kb on - strand at 828.467 kb on - strand at 828.472 kb on + strand at 828.472 kb on + strand at 828.472 kb on + strand at 828.473 kb on - strand at 828.473 kb on - strand at 828.570 kb on + strand at 828.635 kb on - strand, within katB at 828.667 kb on - strand, within katB at 828.675 kb on + strand, within katB at 828.718 kb on + strand, within katB at 828.718 kb on + strand, within katB at 828.719 kb on - strand, within katB at 828.719 kb on - strand, within katB at 828.719 kb on - strand, within katB at 828.805 kb on - strand, within katB at 828.886 kb on - strand, within katB at 828.931 kb on + strand, within katB at 828.968 kb on - strand, within katB at 828.968 kb on - strand, within katB at 829.079 kb on - strand, within katB at 829.167 kb on + strand, within katB at 829.167 kb on + strand, within katB at 829.167 kb on + strand, within katB at 829.233 kb on + strand, within katB at 829.234 kb on - strand, within katB at 829.234 kb on - strand, within katB at 829.314 kb on + strand, within katB at 829.348 kb on - strand, within katB at 829.361 kb on - strand, within katB at 829.364 kb on - strand, within katB at 829.393 kb on + strand, within katB at 829.393 kb on + strand, within katB at 829.484 kb on - strand, within katB at 829.484 kb on - strand, within katB at 829.572 kb on - strand, within katB at 829.572 kb on - strand, within katB at 829.656 kb on - strand, within katB at 829.706 kb on + strand, within katB at 829.707 kb on - strand, within katB at 829.733 kb on - strand, within katB at 829.733 kb on - strand, within katB at 829.784 kb on + strand, within katB at 829.923 kb on - strand at 830.023 kb on + strand at 830.023 kb on + strand at 830.024 kb on - strand at 830.137 kb on + strand at 830.230 kb on + strand at 830.230 kb on + strand at 830.230 kb on + strand at 830.231 kb on - strand at 830.263 kb on + strand at 830.263 kb on + strand at 830.264 kb on - strand at 830.264 kb on - strand at 830.264 kb on - strand at 830.282 kb on + strand at 830.283 kb on - strand at 830.348 kb on - strand, within LU632_RS04180 at 830.369 kb on + strand, within LU632_RS04180 at 830.369 kb on + strand, within LU632_RS04180 at 830.372 kb on + strand, within LU632_RS04180 at 830.458 kb on - strand at 830.556 kb on - strand at 830.588 kb on + strand at 830.589 kb on - strand at 830.589 kb on - strand at 830.631 kb on + strand at 830.632 kb on - strand at 830.632 kb on - strand at 830.632 kb on - strand at 830.654 kb on - strand at 830.727 kb on - strand at 830.730 kb on + strand at 830.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 827,503 - +1.4 827,541 + -0.7 827,556 + +1.4 827,557 - -0.3 827,557 - -0.2 827,557 - +1.0 827,558 + +0.2 827,559 - -0.2 827,574 + -0.3 827,575 - -0.2 827,610 - -0.2 827,610 - -0.9 827,637 + +0.2 827,638 - +0.5 827,698 + -0.8 827,699 - -0.2 827,709 - -0.8 827,709 - +0.4 827,826 + -0.1 827,827 - -1.4 827,827 - +0.1 827,829 + -1.2 827,829 + -0.3 827,829 + -0.2 827,830 - +0.8 827,830 - -0.2 827,834 - +0.6 827,834 - +0.8 827,845 + -0.2 827,847 + -2.8 827,847 + -0.2 827,847 + -1.8 827,847 + +2.1 827,848 - -0.0 827,916 + +0.4 827,916 + -0.8 827,916 + +0.7 827,917 - +0.5 827,917 - +0.7 827,920 - -0.8 827,920 - +1.4 828,002 + LU632_RS04170 0.24 -0.6 828,002 + LU632_RS04170 0.24 +0.3 828,002 + LU632_RS04170 0.24 +1.0 828,003 - LU632_RS04170 0.24 +2.6 828,245 + LU632_RS04170 0.69 +1.4 828,245 + LU632_RS04170 0.69 -2.2 828,245 + LU632_RS04170 0.69 +0.1 828,246 - LU632_RS04170 0.69 -0.0 828,309 - LU632_RS04170 0.80 -1.1 828,309 - LU632_RS04170 0.80 -1.2 828,312 + LU632_RS04170 0.81 -0.2 828,313 - LU632_RS04170 0.81 -0.6 828,389 + +0.7 828,390 - -1.2 828,467 - +0.6 828,472 + +0.1 828,472 + -0.3 828,472 + +0.0 828,473 - -0.2 828,473 - +0.1 828,570 + -0.8 828,635 - katB LU632_RS04175 0.11 -1.8 828,667 - katB LU632_RS04175 0.13 +0.3 828,675 + katB LU632_RS04175 0.14 -1.2 828,718 + katB LU632_RS04175 0.16 -1.8 828,718 + katB LU632_RS04175 0.16 +0.5 828,719 - katB LU632_RS04175 0.17 +0.1 828,719 - katB LU632_RS04175 0.17 +0.4 828,719 - katB LU632_RS04175 0.17 +0.2 828,805 - katB LU632_RS04175 0.22 -0.8 828,886 - katB LU632_RS04175 0.28 +2.5 828,931 + katB LU632_RS04175 0.31 +1.0 828,968 - katB LU632_RS04175 0.34 +1.4 828,968 - katB LU632_RS04175 0.34 +0.4 829,079 - katB LU632_RS04175 0.41 -0.6 829,167 + katB LU632_RS04175 0.47 +0.2 829,167 + katB LU632_RS04175 0.47 +0.5 829,167 + katB LU632_RS04175 0.47 -0.2 829,233 + katB LU632_RS04175 0.52 -0.1 829,234 - katB LU632_RS04175 0.52 -0.0 829,234 - katB LU632_RS04175 0.52 -0.9 829,314 + katB LU632_RS04175 0.57 -0.0 829,348 - katB LU632_RS04175 0.59 +1.1 829,361 - katB LU632_RS04175 0.60 +0.8 829,364 - katB LU632_RS04175 0.61 +1.2 829,393 + katB LU632_RS04175 0.63 +1.1 829,393 + katB LU632_RS04175 0.63 +0.4 829,484 - katB LU632_RS04175 0.69 +0.8 829,484 - katB LU632_RS04175 0.69 +0.2 829,572 - katB LU632_RS04175 0.75 +1.2 829,572 - katB LU632_RS04175 0.75 -0.8 829,656 - katB LU632_RS04175 0.80 +0.8 829,706 + katB LU632_RS04175 0.84 -1.2 829,707 - katB LU632_RS04175 0.84 +0.6 829,733 - katB LU632_RS04175 0.86 -0.4 829,733 - katB LU632_RS04175 0.86 -0.5 829,784 + katB LU632_RS04175 0.89 -2.2 829,923 - +1.4 830,023 + +1.8 830,023 + +0.6 830,024 - -0.7 830,137 + -1.2 830,230 + +0.2 830,230 + -0.1 830,230 + -0.5 830,231 - +0.0 830,263 + +1.5 830,263 + +0.4 830,264 - +0.8 830,264 - +0.3 830,264 - +0.8 830,282 + -0.6 830,283 - -0.0 830,348 - LU632_RS04180 0.26 +0.2 830,369 + LU632_RS04180 0.39 +0.8 830,369 + LU632_RS04180 0.39 -0.2 830,372 + LU632_RS04180 0.41 -0.1 830,458 - +2.1 830,556 - -1.8 830,588 + +0.2 830,589 - -0.6 830,589 - +0.8 830,631 + +0.3 830,632 - -0.3 830,632 - -0.3 830,632 - +0.1 830,654 - +0.5 830,727 - +0.1 830,730 + +1.4 830,734 - -0.2
Or see this region's nucleotide sequence