Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03480 and LU632_RS03485 overlap by 1 nucleotides LU632_RS03485 and LU632_RS03490 are separated by 130 nucleotides LU632_RS03490 and LU632_RS03495 are separated by 30 nucleotides LU632_RS03495 and LU632_RS03500 are separated by 7 nucleotides LU632_RS03500 and LU632_RS03505 overlap by 37 nucleotides
LU632_RS03480: LU632_RS03480 - tyrosine-type recombinase/integrase, at 709,447 to 710,481
_RS03480
LU632_RS03485: LU632_RS03485 - helix-turn-helix domain-containing protein, at 710,481 to 711,053
_RS03485
LU632_RS03490: LU632_RS03490 - hypothetical protein, at 711,184 to 711,447
_RS03490
LU632_RS03495: LU632_RS03495 - phage regulatory CII family protein, at 711,478 to 711,987
_RS03495
LU632_RS03500: LU632_RS03500 - DUF2724 domain-containing protein, at 711,995 to 712,195
_RS03500
LU632_RS03505: LU632_RS03505 - DUF5347 domain-containing protein, at 712,159 to 712,497
_RS03505
Position (kb) 711
712 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 710.238 kb on + strand, within LU632_RS03480 at 710.239 kb on - strand, within LU632_RS03480 at 710.242 kb on + strand, within LU632_RS03480 at 710.271 kb on + strand, within LU632_RS03480 at 710.287 kb on - strand, within LU632_RS03480 at 710.288 kb on + strand, within LU632_RS03480 at 710.288 kb on + strand, within LU632_RS03480 at 710.288 kb on + strand, within LU632_RS03480 at 710.288 kb on + strand, within LU632_RS03480 at 710.388 kb on + strand at 710.389 kb on - strand at 711.308 kb on + strand, within LU632_RS03490 at 711.367 kb on - strand, within LU632_RS03490 at 711.367 kb on - strand, within LU632_RS03490 at 711.370 kb on + strand, within LU632_RS03490 at 711.512 kb on - strand at 711.597 kb on + strand, within LU632_RS03495 at 711.598 kb on - strand, within LU632_RS03495 at 711.598 kb on - strand, within LU632_RS03495 at 711.760 kb on + strand, within LU632_RS03495 at 711.760 kb on + strand, within LU632_RS03495 at 711.761 kb on - strand, within LU632_RS03495 at 711.761 kb on - strand, within LU632_RS03495 at 711.994 kb on + strand at 711.994 kb on + strand at 711.995 kb on - strand at 712.139 kb on - strand, within LU632_RS03500 at 712.212 kb on + strand, within LU632_RS03505 at 712.228 kb on - strand, within LU632_RS03505 at 712.238 kb on + strand, within LU632_RS03505 at 712.239 kb on - strand, within LU632_RS03505 at 712.239 kb on - strand, within LU632_RS03505 at 712.239 kb on - strand, within LU632_RS03505 at 712.347 kb on + strand, within LU632_RS03505 at 712.395 kb on - strand, within LU632_RS03505 at 712.431 kb on + strand, within LU632_RS03505
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 710,238 + LU632_RS03480 0.76 +0.3 710,239 - LU632_RS03480 0.77 +1.4 710,242 + LU632_RS03480 0.77 -0.2 710,271 + LU632_RS03480 0.80 +0.4 710,287 - LU632_RS03480 0.81 +0.4 710,288 + LU632_RS03480 0.81 +0.1 710,288 + LU632_RS03480 0.81 -0.1 710,288 + LU632_RS03480 0.81 -0.4 710,288 + LU632_RS03480 0.81 +0.4 710,388 + -0.3 710,389 - +1.0 711,308 + LU632_RS03490 0.47 -1.5 711,367 - LU632_RS03490 0.69 -1.1 711,367 - LU632_RS03490 0.69 +0.8 711,370 + LU632_RS03490 0.70 -0.2 711,512 - -3.0 711,597 + LU632_RS03495 0.23 +0.6 711,598 - LU632_RS03495 0.24 +1.4 711,598 - LU632_RS03495 0.24 -0.2 711,760 + LU632_RS03495 0.55 -0.2 711,760 + LU632_RS03495 0.55 +0.1 711,761 - LU632_RS03495 0.55 +0.1 711,761 - LU632_RS03495 0.55 +1.4 711,994 + -1.1 711,994 + -1.8 711,995 - -0.8 712,139 - LU632_RS03500 0.72 +0.9 712,212 + LU632_RS03505 0.16 -1.2 712,228 - LU632_RS03505 0.20 +0.1 712,238 + LU632_RS03505 0.23 -1.6 712,239 - LU632_RS03505 0.24 +1.4 712,239 - LU632_RS03505 0.24 +0.5 712,239 - LU632_RS03505 0.24 +0.3 712,347 + LU632_RS03505 0.55 +0.8 712,395 - LU632_RS03505 0.70 +0.6 712,431 + LU632_RS03505 0.80 -1.8
Or see this region's nucleotide sequence