Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03400

Experiment: survival 4C, 24 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03395 and LU632_RS03400 are separated by 280 nucleotidesLU632_RS03400 and LU632_RS03405 are separated by 9 nucleotidesLU632_RS03405 and LU632_RS03410 are separated by 129 nucleotidesLU632_RS03410 and LU632_RS03415 are separated by 8 nucleotides LU632_RS03395: LU632_RS03395 - DUF4942 domain-containing protein, at 695,038 to 695,892 _RS03395 LU632_RS03400: LU632_RS03400 - integrase family protein, at 696,173 to 697,573 _RS03400 LU632_RS03405: LU632_RS03405 - hypothetical protein, at 697,583 to 698,206 _RS03405 LU632_RS03410: LU632_RS03410 - helix-turn-helix domain-containing protein, at 698,336 to 698,536 _RS03410 LU632_RS03415: LU632_RS03415 - hypothetical protein, at 698,545 to 698,988 _RS03415 Position (kb) 696 697 698Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 695.257 kb on + strand, within LU632_RS03395at 695.314 kb on - strand, within LU632_RS03395at 695.315 kb on + strand, within LU632_RS03395at 695.315 kb on + strand, within LU632_RS03395at 695.316 kb on - strand, within LU632_RS03395at 695.316 kb on - strand, within LU632_RS03395at 695.316 kb on - strand, within LU632_RS03395at 695.316 kb on - strand, within LU632_RS03395at 695.316 kb on - strand, within LU632_RS03395at 695.325 kb on + strand, within LU632_RS03395at 695.397 kb on + strand, within LU632_RS03395at 695.398 kb on - strand, within LU632_RS03395at 695.452 kb on - strand, within LU632_RS03395at 695.452 kb on - strand, within LU632_RS03395at 695.465 kb on + strand, within LU632_RS03395at 695.534 kb on - strand, within LU632_RS03395at 695.544 kb on + strand, within LU632_RS03395at 695.616 kb on - strand, within LU632_RS03395at 695.664 kb on - strand, within LU632_RS03395at 695.687 kb on + strand, within LU632_RS03395at 695.709 kb on + strand, within LU632_RS03395at 695.713 kb on - strand, within LU632_RS03395at 695.731 kb on - strand, within LU632_RS03395at 695.758 kb on + strand, within LU632_RS03395at 696.022 kb on + strandat 696.041 kb on - strandat 696.134 kb on + strandat 696.184 kb on + strandat 696.267 kb on + strandat 696.267 kb on + strandat 696.268 kb on - strandat 696.498 kb on - strand, within LU632_RS03400at 696.498 kb on - strand, within LU632_RS03400at 696.545 kb on + strand, within LU632_RS03400at 696.546 kb on - strand, within LU632_RS03400at 696.546 kb on - strand, within LU632_RS03400at 696.560 kb on - strand, within LU632_RS03400at 696.603 kb on + strand, within LU632_RS03400at 696.604 kb on - strand, within LU632_RS03400at 696.604 kb on - strand, within LU632_RS03400at 696.604 kb on - strand, within LU632_RS03400at 696.632 kb on - strand, within LU632_RS03400at 696.741 kb on + strand, within LU632_RS03400at 696.742 kb on - strand, within LU632_RS03400at 696.749 kb on + strand, within LU632_RS03400at 696.783 kb on + strand, within LU632_RS03400at 696.821 kb on - strand, within LU632_RS03400at 696.904 kb on + strand, within LU632_RS03400at 696.931 kb on + strand, within LU632_RS03400at 696.948 kb on + strand, within LU632_RS03400at 696.949 kb on - strand, within LU632_RS03400at 696.954 kb on + strand, within LU632_RS03400at 696.955 kb on - strand, within LU632_RS03400at 696.955 kb on - strand, within LU632_RS03400at 696.955 kb on - strand, within LU632_RS03400at 696.955 kb on - strand, within LU632_RS03400at 697.035 kb on + strand, within LU632_RS03400at 697.036 kb on - strand, within LU632_RS03400at 697.095 kb on + strand, within LU632_RS03400at 697.095 kb on + strand, within LU632_RS03400at 697.110 kb on - strand, within LU632_RS03400at 697.117 kb on - strand, within LU632_RS03400at 697.157 kb on + strand, within LU632_RS03400at 697.235 kb on + strand, within LU632_RS03400at 697.236 kb on - strand, within LU632_RS03400at 697.236 kb on - strand, within LU632_RS03400at 697.238 kb on - strand, within LU632_RS03400at 697.238 kb on - strand, within LU632_RS03400at 697.264 kb on + strand, within LU632_RS03400at 697.285 kb on + strand, within LU632_RS03400at 697.285 kb on + strand, within LU632_RS03400at 697.286 kb on - strand, within LU632_RS03400at 697.289 kb on + strand, within LU632_RS03400at 697.289 kb on + strand, within LU632_RS03400at 697.290 kb on - strand, within LU632_RS03400at 697.290 kb on - strand, within LU632_RS03400at 697.325 kb on + strand, within LU632_RS03400at 697.326 kb on - strand, within LU632_RS03400at 697.343 kb on - strand, within LU632_RS03400at 697.343 kb on - strand, within LU632_RS03400at 697.385 kb on + strand, within LU632_RS03400at 697.386 kb on - strand, within LU632_RS03400at 697.582 kb on + strandat 697.725 kb on + strand, within LU632_RS03405at 697.827 kb on + strand, within LU632_RS03405at 697.828 kb on - strand, within LU632_RS03405at 697.991 kb on - strand, within LU632_RS03405at 698.242 kb on + strandat 698.247 kb on - strandat 698.253 kb on + strandat 698.260 kb on + strandat 698.261 kb on - strandat 698.261 kb on - strandat 698.262 kb on + strandat 698.262 kb on + strandat 698.263 kb on - strandat 698.264 kb on + strandat 698.265 kb on - strandat 698.271 kb on + strandat 698.320 kb on - strandat 698.336 kb on - strandat 698.344 kb on - strandat 698.347 kb on - strandat 698.354 kb on - strandat 698.448 kb on - strand, within LU632_RS03410at 698.484 kb on - strand, within LU632_RS03410at 698.484 kb on - strand, within LU632_RS03410at 698.508 kb on - strand, within LU632_RS03410at 698.508 kb on - strand, within LU632_RS03410at 698.508 kb on - strand, within LU632_RS03410

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Per-strain Table

Position Strand Gene LocusTag Fraction survival 4C, 24 hrs
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695,257 + LU632_RS03395 0.26 -0.5
695,314 - LU632_RS03395 0.32 +0.1
695,315 + LU632_RS03395 0.32 +1.0
695,315 + LU632_RS03395 0.32 -0.2
695,316 - LU632_RS03395 0.33 +0.7
695,316 - LU632_RS03395 0.33 +2.0
695,316 - LU632_RS03395 0.33 -0.2
695,316 - LU632_RS03395 0.33 +0.3
695,316 - LU632_RS03395 0.33 -0.2
695,325 + LU632_RS03395 0.34 -0.2
695,397 + LU632_RS03395 0.42 -2.8
695,398 - LU632_RS03395 0.42 +0.8
695,452 - LU632_RS03395 0.48 -1.4
695,452 - LU632_RS03395 0.48 +0.4
695,465 + LU632_RS03395 0.50 -0.5
695,534 - LU632_RS03395 0.58 -2.8
695,544 + LU632_RS03395 0.59 +1.4
695,616 - LU632_RS03395 0.68 -0.8
695,664 - LU632_RS03395 0.73 +0.8
695,687 + LU632_RS03395 0.76 -1.2
695,709 + LU632_RS03395 0.78 +0.1
695,713 - LU632_RS03395 0.79 +1.1
695,731 - LU632_RS03395 0.81 +0.8
695,758 + LU632_RS03395 0.84 -0.2
696,022 + +0.1
696,041 - -0.2
696,134 + -1.4
696,184 + -0.2
696,267 + -0.8
696,267 + +1.1
696,268 - -0.4
696,498 - LU632_RS03400 0.23 +0.5
696,498 - LU632_RS03400 0.23 -0.8
696,545 + LU632_RS03400 0.27 -0.6
696,546 - LU632_RS03400 0.27 -0.7
696,546 - LU632_RS03400 0.27 -0.3
696,560 - LU632_RS03400 0.28 -1.0
696,603 + LU632_RS03400 0.31 -0.2
696,604 - LU632_RS03400 0.31 +0.8
696,604 - LU632_RS03400 0.31 +0.0
696,604 - LU632_RS03400 0.31 -2.5
696,632 - LU632_RS03400 0.33 +0.8
696,741 + LU632_RS03400 0.41 +0.2
696,742 - LU632_RS03400 0.41 -0.9
696,749 + LU632_RS03400 0.41 +0.5
696,783 + LU632_RS03400 0.44 -0.0
696,821 - LU632_RS03400 0.46 -1.4
696,904 + LU632_RS03400 0.52 -0.6
696,931 + LU632_RS03400 0.54 -0.2
696,948 + LU632_RS03400 0.55 +0.2
696,949 - LU632_RS03400 0.55 -0.7
696,954 + LU632_RS03400 0.56 +0.7
696,955 - LU632_RS03400 0.56 +0.6
696,955 - LU632_RS03400 0.56 +0.4
696,955 - LU632_RS03400 0.56 +0.8
696,955 - LU632_RS03400 0.56 -1.8
697,035 + LU632_RS03400 0.62 -0.4
697,036 - LU632_RS03400 0.62 -0.2
697,095 + LU632_RS03400 0.66 -0.1
697,095 + LU632_RS03400 0.66 -0.4
697,110 - LU632_RS03400 0.67 -0.9
697,117 - LU632_RS03400 0.67 -0.6
697,157 + LU632_RS03400 0.70 -1.2
697,235 + LU632_RS03400 0.76 +0.3
697,236 - LU632_RS03400 0.76 +0.2
697,236 - LU632_RS03400 0.76 +1.4
697,238 - LU632_RS03400 0.76 +0.3
697,238 - LU632_RS03400 0.76 -0.6
697,264 + LU632_RS03400 0.78 +0.8
697,285 + LU632_RS03400 0.79 +1.4
697,285 + LU632_RS03400 0.79 +0.1
697,286 - LU632_RS03400 0.79 +0.2
697,289 + LU632_RS03400 0.80 -0.7
697,289 + LU632_RS03400 0.80 -1.1
697,290 - LU632_RS03400 0.80 +0.6
697,290 - LU632_RS03400 0.80 -0.2
697,325 + LU632_RS03400 0.82 +0.4
697,326 - LU632_RS03400 0.82 +0.5
697,343 - LU632_RS03400 0.84 -0.9
697,343 - LU632_RS03400 0.84 +0.3
697,385 + LU632_RS03400 0.87 +0.4
697,386 - LU632_RS03400 0.87 +0.4
697,582 + +0.4
697,725 + LU632_RS03405 0.23 -0.3
697,827 + LU632_RS03405 0.39 +1.2
697,828 - LU632_RS03405 0.39 +1.8
697,991 - LU632_RS03405 0.65 -0.2
698,242 + -0.1
698,247 - +0.8
698,253 + -1.2
698,260 + +0.8
698,261 - -0.2
698,261 - +0.0
698,262 + -0.5
698,262 + -0.6
698,263 - -0.2
698,264 + +0.1
698,265 - +1.3
698,271 + +0.4
698,320 - +0.5
698,336 - -0.1
698,344 - -0.2
698,347 - -0.2
698,354 - -0.2
698,448 - LU632_RS03410 0.56 -0.1
698,484 - LU632_RS03410 0.74 +1.4
698,484 - LU632_RS03410 0.74 -1.1
698,508 - LU632_RS03410 0.86 +0.4
698,508 - LU632_RS03410 0.86 +0.1
698,508 - LU632_RS03410 0.86 -0.4

Or see this region's nucleotide sequence