Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dapB and folC are separated by 661 nucleotides folC and LU632_RS02770 are separated by 791 nucleotides
LU632_RS02760: dapB - 4-hydroxy-tetrahydrodipicolinate reductase, at 558,299 to 559,120
dapB
LU632_RS02765: folC - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 559,782 to 561,026
folC
LU632_RS02770: LU632_RS02770 - IS5 family transposase, at 561,818 to 562,643
_RS02770
Position (kb) 559
560
561
562 Strain fitness (log2 ratio) -2
-1
0
1
2 at 559.133 kb on - strand at 559.187 kb on + strand at 559.212 kb on - strand at 559.212 kb on - strand at 559.247 kb on + strand at 559.247 kb on + strand at 559.275 kb on + strand at 559.356 kb on - strand at 559.356 kb on - strand at 559.405 kb on + strand at 559.405 kb on + strand at 559.406 kb on - strand at 559.453 kb on + strand at 559.454 kb on - strand at 559.547 kb on + strand at 559.547 kb on + strand at 559.547 kb on + strand at 559.548 kb on - strand at 559.601 kb on + strand at 559.616 kb on + strand at 559.655 kb on + strand at 559.691 kb on + strand at 559.722 kb on + strand at 559.774 kb on + strand at 559.800 kb on - strand at 559.810 kb on - strand at 559.896 kb on + strand at 559.914 kb on - strand, within folC at 559.926 kb on + strand, within folC at 559.930 kb on + strand, within folC at 559.931 kb on - strand, within folC at 559.995 kb on - strand, within folC at 560.040 kb on - strand, within folC at 560.079 kb on + strand, within folC at 560.111 kb on - strand, within folC at 560.159 kb on + strand, within folC at 560.159 kb on + strand, within folC at 560.163 kb on + strand, within folC at 560.163 kb on + strand, within folC at 560.271 kb on + strand, within folC at 560.271 kb on + strand, within folC at 560.272 kb on - strand, within folC at 560.272 kb on - strand, within folC at 560.301 kb on + strand, within folC at 560.397 kb on + strand, within folC at 560.410 kb on + strand, within folC at 560.411 kb on - strand, within folC at 560.484 kb on - strand, within folC at 560.484 kb on - strand, within folC at 560.571 kb on - strand, within folC at 560.574 kb on - strand, within folC at 560.574 kb on - strand, within folC at 560.574 kb on - strand, within folC at 560.616 kb on - strand, within folC at 560.616 kb on - strand, within folC at 560.687 kb on + strand, within folC at 560.780 kb on - strand, within folC at 560.780 kb on - strand, within folC at 560.783 kb on + strand, within folC at 560.784 kb on - strand, within folC at 560.850 kb on - strand, within folC at 560.910 kb on + strand at 560.914 kb on - strand at 560.914 kb on - strand at 560.916 kb on - strand at 560.987 kb on + strand at 560.988 kb on - strand at 560.988 kb on - strand at 560.988 kb on - strand at 560.989 kb on + strand at 561.082 kb on + strand at 561.082 kb on + strand at 561.102 kb on - strand at 561.200 kb on - strand at 561.200 kb on - strand at 561.201 kb on + strand at 561.201 kb on + strand at 561.201 kb on + strand at 561.201 kb on + strand at 561.202 kb on - strand at 561.229 kb on + strand at 561.355 kb on + strand at 561.356 kb on - strand at 561.361 kb on + strand at 561.361 kb on + strand at 561.361 kb on + strand at 561.361 kb on + strand at 561.362 kb on - strand at 561.362 kb on - strand at 561.362 kb on - strand at 561.552 kb on + strand at 561.569 kb on + strand at 561.691 kb on + strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.785 kb on - strand at 561.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 559,133 - -0.8 559,187 + -0.3 559,212 - -0.2 559,212 - -0.7 559,247 + -0.2 559,247 + +0.1 559,275 + -1.8 559,356 - +0.8 559,356 - +0.7 559,405 + +0.7 559,405 + +1.2 559,406 - -0.2 559,453 + -0.1 559,454 - +0.2 559,547 + -1.8 559,547 + +0.9 559,547 + +1.2 559,548 - +0.4 559,601 + +0.5 559,616 + +0.5 559,655 + +0.0 559,691 + +0.3 559,722 + -0.2 559,774 + -0.4 559,800 - +0.1 559,810 - +0.3 559,896 + -0.2 559,914 - folC LU632_RS02765 0.11 +0.9 559,926 + folC LU632_RS02765 0.12 -0.2 559,930 + folC LU632_RS02765 0.12 -0.6 559,931 - folC LU632_RS02765 0.12 +1.0 559,995 - folC LU632_RS02765 0.17 -0.8 560,040 - folC LU632_RS02765 0.21 -0.4 560,079 + folC LU632_RS02765 0.24 -0.8 560,111 - folC LU632_RS02765 0.26 +0.5 560,159 + folC LU632_RS02765 0.30 -0.2 560,159 + folC LU632_RS02765 0.30 -1.8 560,163 + folC LU632_RS02765 0.31 +0.8 560,163 + folC LU632_RS02765 0.31 +0.1 560,271 + folC LU632_RS02765 0.39 +0.5 560,271 + folC LU632_RS02765 0.39 -0.2 560,272 - folC LU632_RS02765 0.39 +1.1 560,272 - folC LU632_RS02765 0.39 -0.2 560,301 + folC LU632_RS02765 0.42 -2.2 560,397 + folC LU632_RS02765 0.49 +0.1 560,410 + folC LU632_RS02765 0.50 +1.8 560,411 - folC LU632_RS02765 0.51 +0.2 560,484 - folC LU632_RS02765 0.56 -0.1 560,484 - folC LU632_RS02765 0.56 +0.4 560,571 - folC LU632_RS02765 0.63 -0.6 560,574 - folC LU632_RS02765 0.64 -0.3 560,574 - folC LU632_RS02765 0.64 +0.8 560,574 - folC LU632_RS02765 0.64 -2.0 560,616 - folC LU632_RS02765 0.67 -1.2 560,616 - folC LU632_RS02765 0.67 +0.1 560,687 + folC LU632_RS02765 0.73 -1.5 560,780 - folC LU632_RS02765 0.80 -0.2 560,780 - folC LU632_RS02765 0.80 -0.2 560,783 + folC LU632_RS02765 0.80 +0.4 560,784 - folC LU632_RS02765 0.80 -1.0 560,850 - folC LU632_RS02765 0.86 -0.2 560,910 + +0.0 560,914 - -0.2 560,914 - -1.2 560,916 - +0.1 560,987 + -1.0 560,988 - -0.3 560,988 - +0.1 560,988 - -0.9 560,989 + +0.1 561,082 + -1.6 561,082 + +0.4 561,102 - -0.4 561,200 - -2.2 561,200 - -0.2 561,201 + -0.2 561,201 + -0.2 561,201 + -0.3 561,201 + -0.2 561,202 - -0.9 561,229 + -0.4 561,355 + +0.3 561,356 - +0.6 561,361 + -0.6 561,361 + +0.1 561,361 + -1.4 561,361 + -1.5 561,362 - +0.2 561,362 - -0.2 561,362 - +0.4 561,552 + -0.4 561,569 + +1.3 561,691 + +0.2 561,692 - +0.3 561,692 - -0.5 561,785 - -1.2 561,785 - +0.0
Or see this region's nucleotide sequence