Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02570 and sltY are separated by 500 nucleotides sltY and trpR are separated by 53 nucleotides trpR and yjjX overlap by 15 nucleotides yjjX and gpmB are separated by 51 nucleotides
LU632_RS02570: LU632_RS02570 - cation-translocating P-type ATPase C-terminal domain-containing protein, at 512,088 to 512,538
_RS02570
LU632_RS02575: sltY - murein transglycosylase, at 513,039 to 514,964
sltY
LU632_RS02580: trpR - trp operon repressor, at 515,018 to 515,347
trpR
LU632_RS02585: yjjX - inosine/xanthosine triphosphatase, at 515,333 to 515,865
yjjX
LU632_RS02590: gpmB - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB, at 515,917 to 516,564
gpmB
Position (kb) 513
514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 512.109 kb on - strand at 512.196 kb on + strand, within LU632_RS02570 at 512.209 kb on - strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.344 kb on + strand, within LU632_RS02570 at 512.344 kb on + strand, within LU632_RS02570 at 512.345 kb on - strand, within LU632_RS02570 at 512.351 kb on + strand, within LU632_RS02570 at 512.351 kb on + strand, within LU632_RS02570 at 512.352 kb on - strand, within LU632_RS02570 at 512.412 kb on + strand, within LU632_RS02570 at 512.539 kb on - strand at 512.539 kb on - strand at 512.558 kb on - strand at 512.579 kb on + strand at 512.579 kb on + strand at 512.579 kb on + strand at 512.665 kb on + strand at 512.668 kb on + strand at 512.668 kb on + strand at 512.669 kb on - strand at 512.716 kb on + strand at 512.794 kb on + strand at 512.800 kb on + strand at 512.801 kb on - strand at 512.821 kb on - strand at 512.836 kb on - strand at 512.890 kb on + strand at 512.911 kb on - strand at 512.913 kb on + strand at 512.913 kb on + strand at 512.914 kb on - strand at 512.914 kb on - strand at 512.923 kb on + strand at 512.993 kb on + strand at 512.993 kb on + strand at 512.993 kb on + strand at 512.993 kb on + strand at 512.993 kb on + strand at 512.996 kb on + strand at 512.996 kb on + strand at 512.997 kb on - strand at 513.011 kb on + strand at 513.217 kb on + strand at 513.217 kb on + strand at 513.218 kb on - strand at 513.218 kb on - strand at 513.219 kb on + strand at 513.219 kb on + strand at 513.319 kb on + strand, within sltY at 513.344 kb on + strand, within sltY at 513.405 kb on - strand, within sltY at 513.432 kb on + strand, within sltY at 513.432 kb on + strand, within sltY at 513.432 kb on + strand, within sltY at 513.510 kb on - strand, within sltY at 513.658 kb on - strand, within sltY at 513.695 kb on + strand, within sltY at 513.763 kb on + strand, within sltY at 513.938 kb on + strand, within sltY at 514.021 kb on + strand, within sltY at 514.026 kb on + strand, within sltY at 514.096 kb on + strand, within sltY at 514.096 kb on + strand, within sltY at 514.097 kb on - strand, within sltY at 514.140 kb on - strand, within sltY at 514.201 kb on - strand, within sltY at 514.207 kb on + strand, within sltY at 514.207 kb on + strand, within sltY at 514.207 kb on + strand, within sltY at 514.207 kb on + strand, within sltY at 514.207 kb on + strand, within sltY at 514.208 kb on - strand, within sltY at 514.208 kb on - strand, within sltY at 514.284 kb on + strand, within sltY at 514.372 kb on - strand, within sltY at 514.436 kb on + strand, within sltY at 514.478 kb on + strand, within sltY at 514.484 kb on + strand, within sltY at 514.589 kb on + strand, within sltY at 514.619 kb on + strand, within sltY at 514.619 kb on + strand, within sltY at 514.619 kb on + strand, within sltY at 514.620 kb on - strand, within sltY at 514.647 kb on + strand, within sltY at 514.685 kb on + strand, within sltY at 514.685 kb on + strand, within sltY at 514.686 kb on - strand, within sltY at 514.705 kb on - strand, within sltY at 514.867 kb on - strand at 514.888 kb on - strand at 514.897 kb on - strand at 514.897 kb on - strand at 514.897 kb on - strand at 514.897 kb on - strand at 514.897 kb on - strand at 515.017 kb on + strand at 515.100 kb on - strand, within trpR at 515.127 kb on + strand, within trpR at 515.128 kb on - strand, within trpR at 515.193 kb on + strand, within trpR at 515.194 kb on - strand, within trpR at 515.326 kb on - strand at 515.350 kb on + strand at 515.351 kb on - strand at 515.351 kb on - strand at 515.351 kb on - strand at 515.351 kb on - strand at 515.406 kb on + strand, within yjjX at 515.467 kb on + strand, within yjjX at 515.550 kb on - strand, within yjjX at 515.597 kb on + strand, within yjjX at 515.597 kb on + strand, within yjjX at 515.641 kb on + strand, within yjjX at 515.642 kb on - strand, within yjjX at 515.744 kb on - strand, within yjjX at 515.815 kb on + strand at 515.865 kb on + strand at 515.866 kb on - strand at 515.882 kb on + strand at 515.883 kb on - strand at 515.900 kb on + strand at 515.929 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 512,109 - +0.1 512,196 + LU632_RS02570 0.24 -0.8 512,209 - LU632_RS02570 0.27 +0.3 512,291 + LU632_RS02570 0.45 +0.6 512,291 + LU632_RS02570 0.45 -0.5 512,291 + LU632_RS02570 0.45 -0.7 512,344 + LU632_RS02570 0.57 +0.5 512,344 + LU632_RS02570 0.57 +0.3 512,345 - LU632_RS02570 0.57 +0.1 512,351 + LU632_RS02570 0.58 -0.2 512,351 + LU632_RS02570 0.58 +0.8 512,352 - LU632_RS02570 0.59 -1.2 512,412 + LU632_RS02570 0.72 -0.2 512,539 - +0.8 512,539 - +1.3 512,558 - -0.2 512,579 + +1.6 512,579 + +0.3 512,579 + -0.2 512,665 + -0.8 512,668 + +0.6 512,668 + +0.3 512,669 - -0.2 512,716 + +0.6 512,794 + +0.6 512,800 + +0.1 512,801 - -0.6 512,821 - -0.4 512,836 - -0.6 512,890 + -0.2 512,911 - -1.2 512,913 + -0.1 512,913 + -1.2 512,914 - -0.2 512,914 - -0.2 512,923 + +0.5 512,993 + +1.1 512,993 + -0.7 512,993 + -1.2 512,993 + -0.5 512,993 + -0.9 512,996 + -0.2 512,996 + -1.2 512,997 - -0.4 513,011 + -0.9 513,217 + -1.8 513,217 + -0.2 513,218 - -1.8 513,218 - -0.2 513,219 + -0.5 513,219 + -1.3 513,319 + sltY LU632_RS02575 0.15 +0.8 513,344 + sltY LU632_RS02575 0.16 -1.1 513,405 - sltY LU632_RS02575 0.19 -1.2 513,432 + sltY LU632_RS02575 0.20 -1.5 513,432 + sltY LU632_RS02575 0.20 -2.2 513,432 + sltY LU632_RS02575 0.20 -0.2 513,510 - sltY LU632_RS02575 0.24 -0.2 513,658 - sltY LU632_RS02575 0.32 -1.2 513,695 + sltY LU632_RS02575 0.34 -1.2 513,763 + sltY LU632_RS02575 0.38 -0.2 513,938 + sltY LU632_RS02575 0.47 +0.8 514,021 + sltY LU632_RS02575 0.51 -0.7 514,026 + sltY LU632_RS02575 0.51 -0.6 514,096 + sltY LU632_RS02575 0.55 -1.8 514,096 + sltY LU632_RS02575 0.55 -1.3 514,097 - sltY LU632_RS02575 0.55 -1.8 514,140 - sltY LU632_RS02575 0.57 -2.4 514,201 - sltY LU632_RS02575 0.60 -0.8 514,207 + sltY LU632_RS02575 0.61 -0.9 514,207 + sltY LU632_RS02575 0.61 -1.0 514,207 + sltY LU632_RS02575 0.61 -0.2 514,207 + sltY LU632_RS02575 0.61 -0.2 514,207 + sltY LU632_RS02575 0.61 +0.1 514,208 - sltY LU632_RS02575 0.61 -0.0 514,208 - sltY LU632_RS02575 0.61 -0.9 514,284 + sltY LU632_RS02575 0.65 -1.2 514,372 - sltY LU632_RS02575 0.69 -0.8 514,436 + sltY LU632_RS02575 0.73 +0.3 514,478 + sltY LU632_RS02575 0.75 +0.8 514,484 + sltY LU632_RS02575 0.75 -0.8 514,589 + sltY LU632_RS02575 0.80 +0.5 514,619 + sltY LU632_RS02575 0.82 -0.8 514,619 + sltY LU632_RS02575 0.82 -0.2 514,619 + sltY LU632_RS02575 0.82 -0.9 514,620 - sltY LU632_RS02575 0.82 -1.0 514,647 + sltY LU632_RS02575 0.83 -1.3 514,685 + sltY LU632_RS02575 0.85 -1.4 514,685 + sltY LU632_RS02575 0.85 -1.2 514,686 - sltY LU632_RS02575 0.86 -0.9 514,705 - sltY LU632_RS02575 0.87 -1.4 514,867 - -0.8 514,888 - -0.5 514,897 - -3.2 514,897 - -3.4 514,897 - +0.1 514,897 - -0.2 514,897 - -0.9 515,017 + -0.2 515,100 - trpR LU632_RS02580 0.25 -0.2 515,127 + trpR LU632_RS02580 0.33 +0.8 515,128 - trpR LU632_RS02580 0.33 -0.2 515,193 + trpR LU632_RS02580 0.53 -0.6 515,194 - trpR LU632_RS02580 0.53 -2.2 515,326 - -0.2 515,350 + -0.8 515,351 - +0.5 515,351 - -0.6 515,351 - +1.4 515,351 - -0.5 515,406 + yjjX LU632_RS02585 0.14 +0.2 515,467 + yjjX LU632_RS02585 0.25 +0.0 515,550 - yjjX LU632_RS02585 0.41 +0.5 515,597 + yjjX LU632_RS02585 0.50 -1.1 515,597 + yjjX LU632_RS02585 0.50 -1.2 515,641 + yjjX LU632_RS02585 0.58 -1.2 515,642 - yjjX LU632_RS02585 0.58 -2.5 515,744 - yjjX LU632_RS02585 0.77 +0.6 515,815 + +0.5 515,865 + -1.0 515,866 - +1.6 515,882 + -0.2 515,883 - +1.8 515,900 + +1.4 515,929 + +1.1
Or see this region's nucleotide sequence