Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt deoC and LU632_RS02520 are separated by 15 nucleotides LU632_RS02520 and deoB are separated by 79 nucleotides
LU632_RS02515: deoC - deoxyribose-phosphate aldolase, at 499,390 to 500,169
deoC
LU632_RS02520: LU632_RS02520 - thymidine phosphorylase, at 500,185 to 501,027
_RS02520
LU632_RS02525: deoB - phosphopentomutase, at 501,107 to 502,330
deoB
Position (kb) 500
501
502 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 499.209 kb on + strand at 499.209 kb on + strand at 499.210 kb on - strand at 499.214 kb on + strand at 499.214 kb on + strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.306 kb on + strand at 499.307 kb on - strand at 499.307 kb on - strand at 499.358 kb on + strand at 499.359 kb on - strand at 499.530 kb on + strand, within deoC at 499.530 kb on + strand, within deoC at 499.531 kb on - strand, within deoC at 499.531 kb on - strand, within deoC at 499.534 kb on + strand, within deoC at 499.884 kb on + strand, within deoC at 500.053 kb on - strand, within deoC at 500.331 kb on + strand, within LU632_RS02520 at 500.331 kb on + strand, within LU632_RS02520 at 500.331 kb on + strand, within LU632_RS02520 at 500.332 kb on - strand, within LU632_RS02520 at 500.332 kb on - strand, within LU632_RS02520 at 500.403 kb on + strand, within LU632_RS02520 at 500.425 kb on + strand, within LU632_RS02520 at 500.426 kb on - strand, within LU632_RS02520 at 500.426 kb on - strand, within LU632_RS02520 at 500.429 kb on - strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.511 kb on + strand, within LU632_RS02520 at 500.857 kb on + strand, within LU632_RS02520 at 500.857 kb on + strand, within LU632_RS02520 at 500.858 kb on - strand, within LU632_RS02520 at 500.959 kb on + strand at 500.959 kb on + strand at 501.051 kb on + strand at 501.117 kb on + strand at 501.117 kb on + strand at 501.205 kb on + strand at 501.206 kb on - strand at 501.247 kb on + strand, within deoB at 501.247 kb on + strand, within deoB at 501.248 kb on - strand, within deoB at 501.248 kb on - strand, within deoB at 501.368 kb on + strand, within deoB at 501.397 kb on + strand, within deoB at 501.453 kb on - strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.587 kb on - strand, within deoB at 501.587 kb on - strand, within deoB at 501.612 kb on - strand, within deoB at 501.612 kb on - strand, within deoB at 501.677 kb on + strand, within deoB at 501.722 kb on + strand, within deoB at 501.722 kb on + strand, within deoB at 501.723 kb on - strand, within deoB at 501.724 kb on + strand, within deoB at 501.724 kb on + strand, within deoB at 501.724 kb on + strand, within deoB at 501.725 kb on - strand, within deoB at 501.725 kb on - strand, within deoB at 501.826 kb on + strand, within deoB at 501.827 kb on - strand, within deoB at 501.897 kb on - strand, within deoB at 501.913 kb on + strand, within deoB at 501.914 kb on - strand, within deoB at 501.914 kb on - strand, within deoB at 501.914 kb on - strand, within deoB
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 499,209 + +0.5 499,209 + -0.2 499,210 - +0.8 499,214 + +0.8 499,214 + -0.5 499,215 - +0.4 499,215 - -1.3 499,215 - +1.0 499,306 + +0.1 499,307 - -1.9 499,307 - -0.4 499,358 + -0.3 499,359 - -2.6 499,530 + deoC LU632_RS02515 0.18 -0.7 499,530 + deoC LU632_RS02515 0.18 -0.8 499,531 - deoC LU632_RS02515 0.18 -2.2 499,531 - deoC LU632_RS02515 0.18 -0.8 499,534 + deoC LU632_RS02515 0.18 -0.7 499,884 + deoC LU632_RS02515 0.63 +0.0 500,053 - deoC LU632_RS02515 0.85 -1.9 500,331 + LU632_RS02520 0.17 +1.0 500,331 + LU632_RS02520 0.17 +0.4 500,331 + LU632_RS02520 0.17 -0.2 500,332 - LU632_RS02520 0.17 -2.9 500,332 - LU632_RS02520 0.17 -2.2 500,403 + LU632_RS02520 0.26 -0.2 500,425 + LU632_RS02520 0.28 -0.5 500,426 - LU632_RS02520 0.29 -1.6 500,426 - LU632_RS02520 0.29 -1.2 500,429 - LU632_RS02520 0.29 -2.5 500,494 + LU632_RS02520 0.37 -0.4 500,494 + LU632_RS02520 0.37 -0.4 500,494 + LU632_RS02520 0.37 +0.4 500,494 + LU632_RS02520 0.37 -0.2 500,495 - LU632_RS02520 0.37 -4.0 500,495 - LU632_RS02520 0.37 -2.2 500,495 - LU632_RS02520 0.37 -3.9 500,511 + LU632_RS02520 0.39 +0.2 500,857 + LU632_RS02520 0.80 +0.3 500,857 + LU632_RS02520 0.80 +1.2 500,858 - LU632_RS02520 0.80 -1.8 500,959 + +1.4 500,959 + +1.0 501,051 + +2.0 501,117 + -4.3 501,117 + -3.4 501,205 + -1.2 501,206 - -4.4 501,247 + deoB LU632_RS02525 0.11 -3.4 501,247 + deoB LU632_RS02525 0.11 -1.4 501,248 - deoB LU632_RS02525 0.12 -3.7 501,248 - deoB LU632_RS02525 0.12 -3.2 501,368 + deoB LU632_RS02525 0.21 -3.5 501,397 + deoB LU632_RS02525 0.24 -1.2 501,453 - deoB LU632_RS02525 0.28 -1.2 501,586 + deoB LU632_RS02525 0.39 -3.2 501,586 + deoB LU632_RS02525 0.39 -2.2 501,586 + deoB LU632_RS02525 0.39 -4.2 501,586 + deoB LU632_RS02525 0.39 -3.0 501,587 - deoB LU632_RS02525 0.39 -3.1 501,587 - deoB LU632_RS02525 0.39 -1.2 501,612 - deoB LU632_RS02525 0.41 -2.4 501,612 - deoB LU632_RS02525 0.41 -0.2 501,677 + deoB LU632_RS02525 0.47 -0.8 501,722 + deoB LU632_RS02525 0.50 -2.4 501,722 + deoB LU632_RS02525 0.50 -2.0 501,723 - deoB LU632_RS02525 0.50 -2.7 501,724 + deoB LU632_RS02525 0.50 -1.2 501,724 + deoB LU632_RS02525 0.50 -3.5 501,724 + deoB LU632_RS02525 0.50 -2.8 501,725 - deoB LU632_RS02525 0.50 -3.0 501,725 - deoB LU632_RS02525 0.50 -2.2 501,826 + deoB LU632_RS02525 0.59 -1.8 501,827 - deoB LU632_RS02525 0.59 -5.3 501,897 - deoB LU632_RS02525 0.65 -1.8 501,913 + deoB LU632_RS02525 0.66 -2.5 501,914 - deoB LU632_RS02525 0.66 -2.8 501,914 - deoB LU632_RS02525 0.66 -3.8 501,914 - deoB LU632_RS02525 0.66 -5.2
Or see this region's nucleotide sequence