Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02265 and LU632_RS02270 are separated by 812 nucleotides LU632_RS02270 and LU632_RS02275 are separated by 307 nucleotides LU632_RS02275 and LU632_RS02280 are separated by 230 nucleotides
LU632_RS02265: LU632_RS02265 - LysR family transcriptional regulator, at 447,596 to 448,498
_RS02265
LU632_RS02270: LU632_RS02270 - hypothetical protein, at 449,311 to 449,604
_RS02270
LU632_RS02275: LU632_RS02275 - DoxX family protein, at 449,912 to 450,304
_RS02275
LU632_RS02280: LU632_RS02280 - YqjK-like family protein, at 450,535 to 450,816
_RS02280
Position (kb) 449
450 Strain fitness (log2 ratio) -2
-1
0
1
2 at 448.325 kb on - strand, within LU632_RS02265 at 448.388 kb on + strand, within LU632_RS02265 at 448.389 kb on - strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.396 kb on + strand, within LU632_RS02265 at 448.396 kb on + strand, within LU632_RS02265 at 448.397 kb on - strand, within LU632_RS02265 at 448.397 kb on - strand, within LU632_RS02265 at 448.401 kb on + strand, within LU632_RS02265 at 448.401 kb on + strand, within LU632_RS02265 at 448.402 kb on - strand, within LU632_RS02265 at 448.402 kb on - strand, within LU632_RS02265 at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.409 kb on - strand at 448.409 kb on - strand at 448.411 kb on + strand at 448.412 kb on - strand at 448.477 kb on - strand at 448.500 kb on + strand at 448.528 kb on + strand at 448.528 kb on + strand at 448.528 kb on + strand at 448.529 kb on - strand at 448.584 kb on + strand at 448.591 kb on - strand at 448.622 kb on + strand at 448.623 kb on - strand at 448.640 kb on - strand at 448.664 kb on - strand at 448.698 kb on - strand at 448.698 kb on - strand at 448.698 kb on - strand at 448.728 kb on - strand at 448.849 kb on - strand at 448.850 kb on + strand at 448.876 kb on - strand at 448.899 kb on - strand at 448.994 kb on + strand at 449.280 kb on - strand at 449.341 kb on - strand, within LU632_RS02270 at 449.408 kb on + strand, within LU632_RS02270 at 449.524 kb on - strand, within LU632_RS02270 at 449.544 kb on + strand, within LU632_RS02270 at 449.600 kb on + strand at 449.657 kb on + strand at 450.062 kb on - strand, within LU632_RS02275 at 450.074 kb on + strand, within LU632_RS02275 at 450.193 kb on + strand, within LU632_RS02275 at 450.194 kb on - strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.299 kb on - strand at 450.308 kb on + strand at 450.368 kb on - strand at 450.551 kb on + strand at 450.574 kb on - strand, within LU632_RS02280
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 448,325 - LU632_RS02265 0.81 -0.9 448,388 + LU632_RS02265 0.88 -0.5 448,389 - LU632_RS02265 0.88 +0.4 448,390 + LU632_RS02265 0.88 -2.0 448,390 + LU632_RS02265 0.88 -0.2 448,390 + LU632_RS02265 0.88 +1.4 448,390 + LU632_RS02265 0.88 +0.2 448,390 + LU632_RS02265 0.88 -0.0 448,396 + LU632_RS02265 0.89 -1.2 448,396 + LU632_RS02265 0.89 -0.8 448,397 - LU632_RS02265 0.89 +1.6 448,397 - LU632_RS02265 0.89 +0.5 448,401 + LU632_RS02265 0.89 -1.2 448,401 + LU632_RS02265 0.89 -0.3 448,402 - LU632_RS02265 0.89 -0.3 448,402 - LU632_RS02265 0.89 -1.2 448,408 + -0.5 448,408 + -0.2 448,408 + -0.2 448,408 + -1.4 448,408 + -0.6 448,409 - -1.0 448,409 - -0.8 448,411 + +0.4 448,412 - +0.4 448,477 - +1.4 448,500 + +0.3 448,528 + -0.1 448,528 + +1.1 448,528 + +0.4 448,529 - -1.2 448,584 + +1.8 448,591 - -0.2 448,622 + -0.5 448,623 - +0.0 448,640 - +0.3 448,664 - -0.2 448,698 - +0.1 448,698 - -0.3 448,698 - +0.7 448,728 - -1.2 448,849 - +0.9 448,850 + +1.4 448,876 - +1.8 448,899 - -1.2 448,994 + +0.1 449,280 - +0.7 449,341 - LU632_RS02270 0.10 -2.2 449,408 + LU632_RS02270 0.33 +0.4 449,524 - LU632_RS02270 0.72 -1.0 449,544 + LU632_RS02270 0.79 -1.3 449,600 + +0.5 449,657 + +0.1 450,062 - LU632_RS02275 0.38 -0.5 450,074 + LU632_RS02275 0.41 -0.8 450,193 + LU632_RS02275 0.72 -0.8 450,194 - LU632_RS02275 0.72 +0.3 450,195 + LU632_RS02275 0.72 -0.2 450,195 + LU632_RS02275 0.72 -0.1 450,195 + LU632_RS02275 0.72 +0.5 450,196 - LU632_RS02275 0.72 +0.5 450,196 - LU632_RS02275 0.72 -0.8 450,196 - LU632_RS02275 0.72 -0.4 450,299 - -0.3 450,308 + -1.2 450,368 - +0.8 450,551 + +0.2 450,574 - LU632_RS02280 0.14 +0.5
Or see this region's nucleotide sequence