Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02185 and LU632_RS02190 overlap by 17 nucleotides LU632_RS02190 and LU632_RS02195 overlap by 4 nucleotides LU632_RS02195 and LU632_RS02200 are separated by 64 nucleotides
LU632_RS02185: LU632_RS02185 - amidohydrolase/deacetylase family metallohydrolase, at 430,951 to 432,087
_RS02185
LU632_RS02190: LU632_RS02190 - DgaE family pyridoxal phosphate-dependent ammonia lyase, at 432,071 to 433,192
_RS02190
LU632_RS02195: LU632_RS02195 - KDGP aldolase family protein, at 433,189 to 433,929
_RS02195
LU632_RS02200: LU632_RS02200 - lactonase family protein, at 433,994 to 435,139
_RS02200
Position (kb) 432
433
434 Strain fitness (log2 ratio) -1
0
1
2 at 431.146 kb on + strand, within LU632_RS02185 at 431.146 kb on + strand, within LU632_RS02185 at 431.147 kb on - strand, within LU632_RS02185 at 431.148 kb on - strand, within LU632_RS02185 at 431.272 kb on + strand, within LU632_RS02185 at 431.273 kb on - strand, within LU632_RS02185 at 431.273 kb on - strand, within LU632_RS02185 at 431.273 kb on - strand, within LU632_RS02185 at 431.386 kb on - strand, within LU632_RS02185 at 431.534 kb on + strand, within LU632_RS02185 at 431.534 kb on + strand, within LU632_RS02185 at 431.575 kb on + strand, within LU632_RS02185 at 431.576 kb on - strand, within LU632_RS02185 at 431.576 kb on - strand, within LU632_RS02185 at 431.755 kb on + strand, within LU632_RS02185 at 431.755 kb on + strand, within LU632_RS02185 at 431.755 kb on + strand, within LU632_RS02185 at 431.914 kb on + strand, within LU632_RS02185 at 432.084 kb on - strand at 432.092 kb on + strand at 432.093 kb on - strand at 432.100 kb on - strand at 432.182 kb on + strand at 432.198 kb on - strand, within LU632_RS02190 at 432.236 kb on + strand, within LU632_RS02190 at 432.236 kb on + strand, within LU632_RS02190 at 432.237 kb on - strand, within LU632_RS02190 at 432.411 kb on + strand, within LU632_RS02190 at 432.665 kb on + strand, within LU632_RS02190 at 432.666 kb on - strand, within LU632_RS02190 at 432.666 kb on - strand, within LU632_RS02190 at 432.695 kb on + strand, within LU632_RS02190 at 433.067 kb on + strand, within LU632_RS02190 at 433.079 kb on + strand, within LU632_RS02190 at 433.145 kb on - strand at 433.249 kb on - strand at 433.357 kb on + strand, within LU632_RS02195 at 433.358 kb on - strand, within LU632_RS02195 at 433.358 kb on - strand, within LU632_RS02195 at 433.780 kb on + strand, within LU632_RS02195 at 433.780 kb on + strand, within LU632_RS02195 at 433.780 kb on + strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.837 kb on - strand, within LU632_RS02195 at 433.841 kb on - strand, within LU632_RS02195 at 433.841 kb on - strand, within LU632_RS02195 at 433.977 kb on + strand at 433.977 kb on + strand at 433.977 kb on + strand at 433.978 kb on - strand at 433.978 kb on - strand at 433.979 kb on + strand at 433.980 kb on - strand at 433.980 kb on - strand at 433.980 kb on - strand at 433.999 kb on + strand at 434.069 kb on + strand at 434.070 kb on - strand at 434.075 kb on + strand at 434.076 kb on - strand at 434.076 kb on - strand at 434.087 kb on + strand at 434.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 431,146 + LU632_RS02185 0.17 +0.2 431,146 + LU632_RS02185 0.17 +0.8 431,147 - LU632_RS02185 0.17 -0.3 431,148 - LU632_RS02185 0.17 +0.4 431,272 + LU632_RS02185 0.28 -0.0 431,273 - LU632_RS02185 0.28 -0.2 431,273 - LU632_RS02185 0.28 -0.8 431,273 - LU632_RS02185 0.28 -1.2 431,386 - LU632_RS02185 0.38 -0.6 431,534 + LU632_RS02185 0.51 -0.4 431,534 + LU632_RS02185 0.51 -0.2 431,575 + LU632_RS02185 0.55 -0.2 431,576 - LU632_RS02185 0.55 +0.4 431,576 - LU632_RS02185 0.55 +0.8 431,755 + LU632_RS02185 0.71 -0.9 431,755 + LU632_RS02185 0.71 -0.6 431,755 + LU632_RS02185 0.71 -0.7 431,914 + LU632_RS02185 0.85 +0.1 432,084 - +1.8 432,092 + +0.8 432,093 - +1.4 432,100 - +0.6 432,182 + +0.6 432,198 - LU632_RS02190 0.11 -0.5 432,236 + LU632_RS02190 0.15 +0.8 432,236 + LU632_RS02190 0.15 +0.8 432,237 - LU632_RS02190 0.15 +0.3 432,411 + LU632_RS02190 0.30 +0.8 432,665 + LU632_RS02190 0.53 +1.1 432,666 - LU632_RS02190 0.53 -0.9 432,666 - LU632_RS02190 0.53 +0.9 432,695 + LU632_RS02190 0.56 -0.7 433,067 + LU632_RS02190 0.89 +0.4 433,079 + LU632_RS02190 0.90 +0.7 433,145 - -0.2 433,249 - -1.5 433,357 + LU632_RS02195 0.23 +1.4 433,358 - LU632_RS02195 0.23 -0.7 433,358 - LU632_RS02195 0.23 +0.8 433,780 + LU632_RS02195 0.80 -0.6 433,780 + LU632_RS02195 0.80 +0.9 433,780 + LU632_RS02195 0.80 -0.5 433,781 - LU632_RS02195 0.80 +0.6 433,781 - LU632_RS02195 0.80 -0.1 433,781 - LU632_RS02195 0.80 +1.1 433,781 - LU632_RS02195 0.80 +0.3 433,837 - LU632_RS02195 0.87 -0.4 433,841 - LU632_RS02195 0.88 -0.2 433,841 - LU632_RS02195 0.88 +0.8 433,977 + +0.4 433,977 + -0.2 433,977 + +1.4 433,978 - +1.1 433,978 - -1.2 433,979 + +1.1 433,980 - -0.1 433,980 - +1.0 433,980 - +0.6 433,999 + -0.1 434,069 + +0.3 434,070 - +1.4 434,075 + -0.6 434,076 - -0.3 434,076 - -0.8 434,087 + -0.2 434,088 - +0.8
Or see this region's nucleotide sequence