Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01245 and dcuR overlap by 23 nucleotides dcuR and LU632_RS01255 overlap by 4 nucleotides LU632_RS01255 and LU632_RS01260 overlap by 35 nucleotides LU632_RS01260 and LU632_RS01265 are separated by 174 nucleotides LU632_RS01265 and ulaR are separated by 75 nucleotides
LU632_RS01245: LU632_RS01245 - FAD:protein FMN transferase, at 261,112 to 262,080
_RS01245
LU632_RS01250: dcuR - two-component system response regulator DcuR, at 262,058 to 262,781
dcuR
LU632_RS01255: LU632_RS01255 - ATP-binding protein, at 262,778 to 263,086
_RS01255
LU632_RS01260: LU632_RS01260 - MurR/RpiR family transcriptional regulator, at 263,052 to 263,912
_RS01260
LU632_RS01265: LU632_RS01265 - hypothetical protein, at 264,087 to 264,224
_RS01265
LU632_RS01270: ulaR - HTH-type transcriptional regulator UlaR, at 264,300 to 265,055
ulaR
Position (kb) 263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 262.071 kb on + strand at 262.071 kb on + strand at 262.286 kb on - strand, within dcuR at 262.336 kb on + strand, within dcuR at 262.384 kb on - strand, within dcuR at 262.384 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.489 kb on + strand, within dcuR at 262.490 kb on - strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.609 kb on + strand, within dcuR at 262.610 kb on - strand, within dcuR at 262.626 kb on + strand, within dcuR at 262.626 kb on + strand, within dcuR at 262.627 kb on - strand, within dcuR at 262.692 kb on - strand, within dcuR at 262.764 kb on + strand at 262.764 kb on + strand at 262.764 kb on + strand at 262.764 kb on + strand at 262.765 kb on - strand at 262.767 kb on + strand at 262.776 kb on + strand at 262.777 kb on - strand at 262.777 kb on - strand at 262.814 kb on + strand, within LU632_RS01255 at 262.815 kb on - strand, within LU632_RS01255 at 262.957 kb on + strand, within LU632_RS01255 at 262.957 kb on + strand, within LU632_RS01255 at 262.958 kb on - strand, within LU632_RS01255 at 262.958 kb on - strand, within LU632_RS01255 at 263.080 kb on + strand at 263.080 kb on + strand at 263.294 kb on + strand, within LU632_RS01260 at 263.295 kb on - strand, within LU632_RS01260 at 263.347 kb on + strand, within LU632_RS01260 at 263.511 kb on + strand, within LU632_RS01260 at 263.511 kb on + strand, within LU632_RS01260 at 263.512 kb on - strand, within LU632_RS01260 at 263.512 kb on - strand, within LU632_RS01260 at 263.513 kb on + strand, within LU632_RS01260 at 263.513 kb on + strand, within LU632_RS01260 at 263.514 kb on - strand, within LU632_RS01260 at 263.601 kb on - strand, within LU632_RS01260 at 263.621 kb on + strand, within LU632_RS01260 at 263.672 kb on + strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.677 kb on - strand, within LU632_RS01260 at 263.682 kb on + strand, within LU632_RS01260 at 263.715 kb on - strand, within LU632_RS01260 at 263.735 kb on - strand, within LU632_RS01260 at 263.825 kb on + strand, within LU632_RS01260 at 263.967 kb on + strand at 263.975 kb on + strand at 263.976 kb on - strand at 263.977 kb on + strand at 264.037 kb on - strand at 264.056 kb on - strand at 264.060 kb on - strand at 264.060 kb on - strand at 264.100 kb on - strand at 264.127 kb on - strand, within LU632_RS01265 at 264.147 kb on + strand, within LU632_RS01265 at 264.147 kb on + strand, within LU632_RS01265 at 264.253 kb on + strand at 264.255 kb on + strand at 264.268 kb on - strand at 264.268 kb on - strand at 264.354 kb on - strand at 264.354 kb on - strand at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.504 kb on - strand, within ulaR at 264.515 kb on - strand, within ulaR at 264.517 kb on - strand, within ulaR at 264.550 kb on + strand, within ulaR at 264.568 kb on + strand, within ulaR at 264.670 kb on + strand, within ulaR at 264.688 kb on + strand, within ulaR at 264.689 kb on - strand, within ulaR at 264.693 kb on - strand, within ulaR at 264.846 kb on - strand, within ulaR at 264.878 kb on + strand, within ulaR at 264.879 kb on - strand, within ulaR at 264.905 kb on + strand, within ulaR
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 262,071 + +0.0 262,071 + -0.2 262,286 - dcuR LU632_RS01250 0.31 -1.2 262,336 + dcuR LU632_RS01250 0.38 -0.4 262,384 - dcuR LU632_RS01250 0.45 -0.2 262,384 - dcuR LU632_RS01250 0.45 -0.4 262,387 - dcuR LU632_RS01250 0.45 -0.2 262,387 - dcuR LU632_RS01250 0.45 -0.2 262,387 - dcuR LU632_RS01250 0.45 +0.8 262,489 + dcuR LU632_RS01250 0.60 -0.7 262,490 - dcuR LU632_RS01250 0.60 -1.4 262,542 + dcuR LU632_RS01250 0.67 -0.4 262,542 + dcuR LU632_RS01250 0.67 -0.2 262,542 + dcuR LU632_RS01250 0.67 +0.8 262,609 + dcuR LU632_RS01250 0.76 +0.2 262,610 - dcuR LU632_RS01250 0.76 -0.8 262,626 + dcuR LU632_RS01250 0.78 -1.8 262,626 + dcuR LU632_RS01250 0.78 -0.3 262,627 - dcuR LU632_RS01250 0.79 -0.2 262,692 - dcuR LU632_RS01250 0.88 +0.5 262,764 + +0.6 262,764 + +0.7 262,764 + -0.2 262,764 + -0.7 262,765 - +0.8 262,767 + +0.2 262,776 + +2.1 262,777 - +0.2 262,777 - +1.7 262,814 + LU632_RS01255 0.12 +0.2 262,815 - LU632_RS01255 0.12 -0.2 262,957 + LU632_RS01255 0.58 +0.8 262,957 + LU632_RS01255 0.58 -0.0 262,958 - LU632_RS01255 0.58 +0.1 262,958 - LU632_RS01255 0.58 +1.8 263,080 + +0.6 263,080 + -0.2 263,294 + LU632_RS01260 0.28 +1.8 263,295 - LU632_RS01260 0.28 +0.5 263,347 + LU632_RS01260 0.34 +0.8 263,511 + LU632_RS01260 0.53 -0.4 263,511 + LU632_RS01260 0.53 +0.6 263,512 - LU632_RS01260 0.53 +0.6 263,512 - LU632_RS01260 0.53 +2.4 263,513 + LU632_RS01260 0.54 +0.4 263,513 + LU632_RS01260 0.54 +0.4 263,514 - LU632_RS01260 0.54 +0.3 263,601 - LU632_RS01260 0.64 +0.3 263,621 + LU632_RS01260 0.66 +0.6 263,672 + LU632_RS01260 0.72 +1.3 263,673 - LU632_RS01260 0.72 +1.4 263,673 - LU632_RS01260 0.72 +1.5 263,673 - LU632_RS01260 0.72 +0.2 263,677 - LU632_RS01260 0.73 -0.2 263,682 + LU632_RS01260 0.73 +0.6 263,715 - LU632_RS01260 0.77 +0.9 263,735 - LU632_RS01260 0.79 +2.8 263,825 + LU632_RS01260 0.90 +0.0 263,967 + -1.8 263,975 + +0.0 263,976 - -0.2 263,977 + -2.0 264,037 - -0.5 264,056 - -0.3 264,060 - -0.1 264,060 - -0.2 264,100 - +1.7 264,127 - LU632_RS01265 0.29 -1.2 264,147 + LU632_RS01265 0.43 +0.0 264,147 + LU632_RS01265 0.43 +0.0 264,253 + -0.4 264,255 + +0.7 264,268 - -0.0 264,268 - -0.1 264,354 - -2.5 264,354 - -1.2 264,467 - ulaR LU632_RS01270 0.22 -1.2 264,467 - ulaR LU632_RS01270 0.22 -1.8 264,467 - ulaR LU632_RS01270 0.22 -3.6 264,467 - ulaR LU632_RS01270 0.22 -2.2 264,504 - ulaR LU632_RS01270 0.27 -1.2 264,515 - ulaR LU632_RS01270 0.28 -1.8 264,517 - ulaR LU632_RS01270 0.29 -0.2 264,550 + ulaR LU632_RS01270 0.33 -0.2 264,568 + ulaR LU632_RS01270 0.35 -0.2 264,670 + ulaR LU632_RS01270 0.49 -2.2 264,688 + ulaR LU632_RS01270 0.51 -2.2 264,689 - ulaR LU632_RS01270 0.51 -1.8 264,693 - ulaR LU632_RS01270 0.52 -2.5 264,846 - ulaR LU632_RS01270 0.72 -2.2 264,878 + ulaR LU632_RS01270 0.76 -2.5 264,879 - ulaR LU632_RS01270 0.77 -0.2 264,905 + ulaR LU632_RS01270 0.80 -1.2
Or see this region's nucleotide sequence