Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cbpA and LU632_RS00590 overlap by 19 nucleotides LU632_RS00590 and LU632_RS00595 are separated by 41 nucleotides LU632_RS00595 and LU632_RS00600 are separated by 302 nucleotides
LU632_RS00585: cbpA - curved DNA-binding protein, at 121,126 to 122,061
cbpA
LU632_RS00590: LU632_RS00590 - chaperone-modulator protein CbpM, at 122,043 to 122,342
_RS00590
LU632_RS00595: LU632_RS00595 - hypothetical protein, at 122,384 to 122,719
_RS00595
LU632_RS00600: LU632_RS00600 - SgcJ/EcaC family oxidoreductase, at 123,022 to 123,474
_RS00600
Position (kb) 122
123 Strain fitness (log2 ratio) -1
0
1
2 at 121.089 kb on + strand at 121.135 kb on - strand at 121.178 kb on - strand at 121.214 kb on + strand at 121.282 kb on - strand, within cbpA at 121.317 kb on + strand, within cbpA at 121.318 kb on - strand, within cbpA at 121.327 kb on + strand, within cbpA at 121.374 kb on + strand, within cbpA at 121.539 kb on - strand, within cbpA at 121.719 kb on + strand, within cbpA at 121.723 kb on + strand, within cbpA at 121.819 kb on - strand, within cbpA at 121.819 kb on - strand, within cbpA at 121.819 kb on - strand, within cbpA at 121.866 kb on - strand, within cbpA at 121.869 kb on + strand, within cbpA at 121.941 kb on + strand, within cbpA at 121.942 kb on - strand, within cbpA at 121.953 kb on + strand, within cbpA at 121.953 kb on + strand, within cbpA at 121.954 kb on - strand, within cbpA at 121.954 kb on - strand, within cbpA at 121.984 kb on - strand at 122.264 kb on + strand, within LU632_RS00590 at 122.558 kb on + strand, within LU632_RS00595 at 122.570 kb on - strand, within LU632_RS00595 at 122.571 kb on + strand, within LU632_RS00595 at 122.572 kb on - strand, within LU632_RS00595 at 122.572 kb on - strand, within LU632_RS00595 at 122.572 kb on - strand, within LU632_RS00595 at 122.631 kb on + strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.720 kb on - strand at 122.730 kb on + strand at 122.731 kb on - strand at 122.751 kb on + strand at 122.820 kb on - strand at 122.967 kb on + strand at 122.983 kb on - strand at 123.082 kb on - strand, within LU632_RS00600 at 123.088 kb on - strand, within LU632_RS00600 at 123.088 kb on - strand, within LU632_RS00600 at 123.093 kb on + strand, within LU632_RS00600 at 123.093 kb on + strand, within LU632_RS00600 at 123.137 kb on + strand, within LU632_RS00600 at 123.302 kb on + strand, within LU632_RS00600 at 123.336 kb on + strand, within LU632_RS00600
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 121,089 + -0.3 121,135 - -0.2 121,178 - -0.2 121,214 + -1.2 121,282 - cbpA LU632_RS00585 0.17 -0.5 121,317 + cbpA LU632_RS00585 0.20 +0.7 121,318 - cbpA LU632_RS00585 0.21 +0.8 121,327 + cbpA LU632_RS00585 0.21 +0.6 121,374 + cbpA LU632_RS00585 0.26 -0.2 121,539 - cbpA LU632_RS00585 0.44 +0.3 121,719 + cbpA LU632_RS00585 0.63 +0.2 121,723 + cbpA LU632_RS00585 0.64 -1.1 121,819 - cbpA LU632_RS00585 0.74 -0.0 121,819 - cbpA LU632_RS00585 0.74 +0.3 121,819 - cbpA LU632_RS00585 0.74 -0.0 121,866 - cbpA LU632_RS00585 0.79 -0.2 121,869 + cbpA LU632_RS00585 0.79 +0.8 121,941 + cbpA LU632_RS00585 0.87 +2.1 121,942 - cbpA LU632_RS00585 0.87 +0.0 121,953 + cbpA LU632_RS00585 0.88 +0.8 121,953 + cbpA LU632_RS00585 0.88 +0.0 121,954 - cbpA LU632_RS00585 0.88 -0.2 121,954 - cbpA LU632_RS00585 0.88 -0.4 121,984 - -0.5 122,264 + LU632_RS00590 0.74 -0.9 122,558 + LU632_RS00595 0.52 -0.9 122,570 - LU632_RS00595 0.55 +0.3 122,571 + LU632_RS00595 0.56 -0.2 122,572 - LU632_RS00595 0.56 +1.2 122,572 - LU632_RS00595 0.56 +0.3 122,572 - LU632_RS00595 0.56 +0.2 122,631 + LU632_RS00595 0.74 -0.6 122,632 - LU632_RS00595 0.74 +0.5 122,632 - LU632_RS00595 0.74 +0.3 122,632 - LU632_RS00595 0.74 +0.3 122,632 - LU632_RS00595 0.74 -1.2 122,720 - +0.2 122,730 + +1.0 122,731 - +0.6 122,751 + -1.2 122,820 - +0.2 122,967 + +0.8 122,983 - +0.8 123,082 - LU632_RS00600 0.13 -0.2 123,088 - LU632_RS00600 0.15 +2.4 123,088 - LU632_RS00600 0.15 +0.8 123,093 + LU632_RS00600 0.16 -1.2 123,093 + LU632_RS00600 0.16 +0.8 123,137 + LU632_RS00600 0.25 +0.8 123,302 + LU632_RS00600 0.62 +0.4 123,336 + LU632_RS00600 0.69 +0.8
Or see this region's nucleotide sequence