Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00210 and LU632_RS00215 are separated by 287 nucleotides LU632_RS00215 and LU632_RS00220 are separated by 25 nucleotides
LU632_RS00210: LU632_RS00210 - hypothetical protein, at 40,865 to 41,110
_RS00210
LU632_RS00215: LU632_RS00215 - N-acetylmuramoyl-L-alanine amidase, at 41,398 to 42,177
_RS00215
LU632_RS00220: LU632_RS00220 - family 10 glycosylhydrolase, at 42,203 to 43,480
_RS00220
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.440 kb on + strand at 40.443 kb on - strand at 40.443 kb on - strand at 40.443 kb on - strand at 40.446 kb on - strand at 40.499 kb on + strand at 40.537 kb on + strand at 40.602 kb on + strand at 40.736 kb on - strand at 40.838 kb on + strand at 40.898 kb on - strand, within LU632_RS00210 at 41.235 kb on - strand at 41.451 kb on - strand at 41.488 kb on + strand, within LU632_RS00215 at 41.489 kb on - strand, within LU632_RS00215 at 41.489 kb on - strand, within LU632_RS00215 at 41.491 kb on - strand, within LU632_RS00215 at 41.552 kb on - strand, within LU632_RS00215 at 41.556 kb on + strand, within LU632_RS00215 at 41.601 kb on - strand, within LU632_RS00215 at 41.642 kb on + strand, within LU632_RS00215 at 41.643 kb on - strand, within LU632_RS00215 at 41.681 kb on - strand, within LU632_RS00215 at 41.723 kb on + strand, within LU632_RS00215 at 41.723 kb on + strand, within LU632_RS00215 at 41.723 kb on + strand, within LU632_RS00215 at 41.723 kb on + strand, within LU632_RS00215 at 41.947 kb on + strand, within LU632_RS00215 at 42.002 kb on + strand, within LU632_RS00215 at 42.007 kb on - strand, within LU632_RS00215 at 42.020 kb on - strand, within LU632_RS00215 at 42.106 kb on - strand at 42.163 kb on + strand at 42.185 kb on + strand at 42.188 kb on + strand at 42.189 kb on - strand at 42.209 kb on + strand at 42.209 kb on + strand at 42.210 kb on - strand at 42.210 kb on - strand at 42.448 kb on - strand, within LU632_RS00220 at 42.585 kb on + strand, within LU632_RS00220 at 42.650 kb on - strand, within LU632_RS00220 at 42.688 kb on + strand, within LU632_RS00220 at 42.688 kb on + strand, within LU632_RS00220 at 42.694 kb on - strand, within LU632_RS00220 at 42.716 kb on + strand, within LU632_RS00220 at 42.860 kb on + strand, within LU632_RS00220 at 42.860 kb on + strand, within LU632_RS00220 at 42.861 kb on - strand, within LU632_RS00220 at 42.861 kb on - strand, within LU632_RS00220 at 42.861 kb on - strand, within LU632_RS00220 at 42.861 kb on - strand, within LU632_RS00220 at 42.861 kb on - strand, within LU632_RS00220 at 42.861 kb on - strand, within LU632_RS00220 at 42.866 kb on + strand, within LU632_RS00220 at 42.867 kb on - strand, within LU632_RS00220 at 42.870 kb on - strand, within LU632_RS00220 at 42.904 kb on + strand, within LU632_RS00220 at 42.905 kb on - strand, within LU632_RS00220 at 42.917 kb on + strand, within LU632_RS00220 at 42.918 kb on - strand, within LU632_RS00220 at 42.970 kb on - strand, within LU632_RS00220 at 42.975 kb on + strand, within LU632_RS00220 at 43.054 kb on + strand, within LU632_RS00220 at 43.055 kb on - strand, within LU632_RS00220 at 43.104 kb on - strand, within LU632_RS00220 at 43.149 kb on + strand, within LU632_RS00220 at 43.157 kb on + strand, within LU632_RS00220 at 43.158 kb on - strand, within LU632_RS00220 at 43.159 kb on + strand, within LU632_RS00220 at 43.175 kb on + strand, within LU632_RS00220
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 40,440 + +0.2 40,443 - +0.2 40,443 - +0.1 40,443 - +0.2 40,446 - +0.4 40,499 + +0.3 40,537 + +0.8 40,602 + +2.0 40,736 - -0.2 40,838 + +0.1 40,898 - LU632_RS00210 0.13 -0.2 41,235 - -0.1 41,451 - -1.2 41,488 + LU632_RS00215 0.12 -1.5 41,489 - LU632_RS00215 0.12 -2.6 41,489 - LU632_RS00215 0.12 -0.8 41,491 - LU632_RS00215 0.12 -0.5 41,552 - LU632_RS00215 0.20 -0.9 41,556 + LU632_RS00215 0.20 -0.2 41,601 - LU632_RS00215 0.26 -0.2 41,642 + LU632_RS00215 0.31 -2.8 41,643 - LU632_RS00215 0.31 -1.6 41,681 - LU632_RS00215 0.36 -1.0 41,723 + LU632_RS00215 0.42 -0.2 41,723 + LU632_RS00215 0.42 +0.8 41,723 + LU632_RS00215 0.42 +0.8 41,723 + LU632_RS00215 0.42 -0.5 41,947 + LU632_RS00215 0.70 +0.8 42,002 + LU632_RS00215 0.77 -0.9 42,007 - LU632_RS00215 0.78 -1.5 42,020 - LU632_RS00215 0.80 -1.6 42,106 - -0.5 42,163 + +1.4 42,185 + -0.2 42,188 + +0.5 42,189 - -0.2 42,209 + +1.0 42,209 + +0.6 42,210 - +0.3 42,210 - -0.1 42,448 - LU632_RS00220 0.19 +0.4 42,585 + LU632_RS00220 0.30 -0.2 42,650 - LU632_RS00220 0.35 +0.1 42,688 + LU632_RS00220 0.38 +1.7 42,688 + LU632_RS00220 0.38 +0.4 42,694 - LU632_RS00220 0.38 -0.5 42,716 + LU632_RS00220 0.40 +0.8 42,860 + LU632_RS00220 0.51 -2.0 42,860 + LU632_RS00220 0.51 +1.4 42,861 - LU632_RS00220 0.51 +0.8 42,861 - LU632_RS00220 0.51 -1.0 42,861 - LU632_RS00220 0.51 -0.2 42,861 - LU632_RS00220 0.51 +0.4 42,861 - LU632_RS00220 0.51 -0.7 42,861 - LU632_RS00220 0.51 -0.8 42,866 + LU632_RS00220 0.52 -0.2 42,867 - LU632_RS00220 0.52 -0.3 42,870 - LU632_RS00220 0.52 +0.6 42,904 + LU632_RS00220 0.55 -0.5 42,905 - LU632_RS00220 0.55 -0.6 42,917 + LU632_RS00220 0.56 +0.8 42,918 - LU632_RS00220 0.56 -0.2 42,970 - LU632_RS00220 0.60 -1.4 42,975 + LU632_RS00220 0.60 -0.4 43,054 + LU632_RS00220 0.67 +0.2 43,055 - LU632_RS00220 0.67 -0.5 43,104 - LU632_RS00220 0.71 -0.8 43,149 + LU632_RS00220 0.74 +0.6 43,157 + LU632_RS00220 0.75 +0.2 43,158 - LU632_RS00220 0.75 +0.5 43,159 + LU632_RS00220 0.75 +0.6 43,175 + LU632_RS00220 0.76 +0.2
Or see this region's nucleotide sequence