Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00130 and LU632_RS00135 overlap by 2 nucleotides LU632_RS00135 and LU632_RS00140 are separated by 71 nucleotides LU632_RS00140 and LU632_RS00145 are separated by 99 nucleotides
LU632_RS00130: LU632_RS00130 - ATP-binding cassette domain-containing protein, at 24,397 to 25,389
_RS00130
LU632_RS00135: LU632_RS00135 - YibL family ribosome-associated protein, at 25,388 to 25,750
_RS00135
LU632_RS00140: LU632_RS00140 - MltR family transcriptional regulator, at 25,822 to 26,346
_RS00140
LU632_RS00145: LU632_RS00145 - mannitol-1-phosphate 5-dehydrogenase, at 26,446 to 27,591
_RS00145
Position (kb) 25
26
27 Strain fitness (log2 ratio) -1
0
1 at 24.834 kb on + strand, within LU632_RS00130 at 25.120 kb on - strand, within LU632_RS00130 at 25.123 kb on + strand, within LU632_RS00130 at 25.123 kb on + strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.502 kb on - strand, within LU632_RS00135 at 25.522 kb on + strand, within LU632_RS00135 at 25.757 kb on + strand at 25.771 kb on + strand at 25.771 kb on + strand at 25.772 kb on - strand at 25.772 kb on - strand at 25.772 kb on - strand at 25.772 kb on - strand at 26.090 kb on + strand, within LU632_RS00140 at 26.121 kb on - strand, within LU632_RS00140 at 26.121 kb on - strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.190 kb on - strand, within LU632_RS00140 at 26.190 kb on - strand, within LU632_RS00140 at 26.275 kb on - strand, within LU632_RS00140 at 26.363 kb on + strand at 26.364 kb on - strand at 26.393 kb on + strand at 26.393 kb on + strand at 26.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 24,834 + LU632_RS00130 0.44 -0.3 25,120 - LU632_RS00130 0.73 -0.3 25,123 + LU632_RS00130 0.73 +0.8 25,123 + LU632_RS00130 0.73 +0.8 25,124 - LU632_RS00130 0.73 +0.8 25,124 - LU632_RS00130 0.73 +1.1 25,124 - LU632_RS00130 0.73 +0.6 25,124 - LU632_RS00130 0.73 -0.9 25,502 - LU632_RS00135 0.31 -0.8 25,522 + LU632_RS00135 0.37 -0.6 25,757 + +0.4 25,771 + +0.3 25,771 + -0.2 25,772 - +0.6 25,772 - +0.5 25,772 - +0.1 25,772 - -0.5 26,090 + LU632_RS00140 0.51 +0.6 26,121 - LU632_RS00140 0.57 -0.2 26,121 - LU632_RS00140 0.57 +0.4 26,189 + LU632_RS00140 0.70 +1.6 26,189 + LU632_RS00140 0.70 +0.7 26,189 + LU632_RS00140 0.70 +0.5 26,189 + LU632_RS00140 0.70 +0.3 26,190 - LU632_RS00140 0.70 +0.4 26,190 - LU632_RS00140 0.70 +1.4 26,275 - LU632_RS00140 0.86 +0.8 26,363 + +0.1 26,364 - -0.1 26,393 + -0.7 26,393 + -0.4 26,448 - -0.2
Or see this region's nucleotide sequence