Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25525

Experiment: survival 4C, 24 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25520 and LU632_RS25525 overlap by 1 nucleotidesLU632_RS25525 and LU632_RS25530 overlap by 4 nucleotidesLU632_RS25530 and LU632_RS25535 are separated by 62 nucleotides LU632_RS25520: LU632_RS25520 - aspartate aminotransferase family protein, at 35,506 to 36,774 _RS25520 LU632_RS25525: LU632_RS25525 - alcohol dehydrogenase catalytic domain-containing protein, at 36,774 to 37,847 _RS25525 LU632_RS25530: LU632_RS25530 - HAD family phosphatase, at 37,844 to 38,482 _RS25530 LU632_RS25535: LU632_RS25535 - MFS transporter, at 38,545 to 39,690 _RS25535 Position (kb) 36 37 38Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 35.786 kb on + strand, within LU632_RS25520at 35.786 kb on + strand, within LU632_RS25520at 35.786 kb on + strand, within LU632_RS25520at 35.787 kb on - strand, within LU632_RS25520at 35.787 kb on - strand, within LU632_RS25520at 35.833 kb on + strand, within LU632_RS25520at 35.853 kb on - strand, within LU632_RS25520at 35.959 kb on - strand, within LU632_RS25520at 35.981 kb on + strand, within LU632_RS25520at 35.982 kb on - strand, within LU632_RS25520at 36.033 kb on + strand, within LU632_RS25520at 36.087 kb on + strand, within LU632_RS25520at 36.087 kb on + strand, within LU632_RS25520at 36.087 kb on + strand, within LU632_RS25520at 36.087 kb on + strand, within LU632_RS25520at 36.087 kb on + strand, within LU632_RS25520at 36.087 kb on + strand, within LU632_RS25520at 36.087 kb on + strand, within LU632_RS25520at 36.087 kb on + strand, within LU632_RS25520at 36.087 kb on + strand, within LU632_RS25520at 36.088 kb on - strand, within LU632_RS25520at 36.088 kb on - strand, within LU632_RS25520at 36.088 kb on - strand, within LU632_RS25520at 36.088 kb on - strand, within LU632_RS25520at 36.123 kb on + strand, within LU632_RS25520at 36.124 kb on - strand, within LU632_RS25520at 36.244 kb on - strand, within LU632_RS25520at 36.244 kb on - strand, within LU632_RS25520at 36.275 kb on + strand, within LU632_RS25520at 36.275 kb on + strand, within LU632_RS25520at 36.275 kb on + strand, within LU632_RS25520at 36.276 kb on - strand, within LU632_RS25520at 36.276 kb on - strand, within LU632_RS25520at 36.276 kb on - strand, within LU632_RS25520at 36.276 kb on - strand, within LU632_RS25520at 36.276 kb on - strand, within LU632_RS25520at 36.305 kb on + strand, within LU632_RS25520at 36.305 kb on + strand, within LU632_RS25520at 36.305 kb on + strand, within LU632_RS25520at 36.306 kb on - strand, within LU632_RS25520at 36.306 kb on - strand, within LU632_RS25520at 36.306 kb on - strand, within LU632_RS25520at 36.309 kb on + strand, within LU632_RS25520at 36.309 kb on + strand, within LU632_RS25520at 36.361 kb on + strand, within LU632_RS25520at 36.372 kb on + strand, within LU632_RS25520at 36.373 kb on - strand, within LU632_RS25520at 36.373 kb on - strand, within LU632_RS25520at 36.376 kb on - strand, within LU632_RS25520at 36.411 kb on - strand, within LU632_RS25520at 36.411 kb on - strand, within LU632_RS25520at 36.518 kb on + strand, within LU632_RS25520at 36.521 kb on + strand, within LU632_RS25520at 36.522 kb on - strand, within LU632_RS25520at 36.539 kb on + strand, within LU632_RS25520at 36.544 kb on + strand, within LU632_RS25520at 36.545 kb on - strand, within LU632_RS25520at 36.545 kb on - strand, within LU632_RS25520at 36.545 kb on - strand, within LU632_RS25520at 36.545 kb on - strand, within LU632_RS25520at 36.757 kb on - strandat 36.758 kb on + strandat 36.758 kb on + strandat 36.758 kb on + strandat 36.759 kb on - strandat 36.806 kb on + strandat 36.809 kb on + strandat 36.810 kb on - strandat 36.881 kb on + strandat 36.882 kb on - strand, within LU632_RS25525at 36.883 kb on + strand, within LU632_RS25525at 36.883 kb on + strand, within LU632_RS25525at 36.884 kb on - strand, within LU632_RS25525at 36.884 kb on - strand, within LU632_RS25525at 36.884 kb on - strand, within LU632_RS25525at 36.898 kb on + strand, within LU632_RS25525at 36.898 kb on + strand, within LU632_RS25525at 36.898 kb on + strand, within LU632_RS25525at 36.899 kb on - strand, within LU632_RS25525at 36.899 kb on - strand, within LU632_RS25525at 36.899 kb on - strand, within LU632_RS25525at 36.902 kb on + strand, within LU632_RS25525at 36.903 kb on - strand, within LU632_RS25525at 37.026 kb on - strand, within LU632_RS25525at 37.031 kb on + strand, within LU632_RS25525at 37.031 kb on + strand, within LU632_RS25525at 37.031 kb on + strand, within LU632_RS25525at 37.032 kb on - strand, within LU632_RS25525at 37.032 kb on - strand, within LU632_RS25525at 37.074 kb on - strand, within LU632_RS25525at 37.074 kb on - strand, within LU632_RS25525at 37.119 kb on + strand, within LU632_RS25525at 37.120 kb on - strand, within LU632_RS25525at 37.127 kb on + strand, within LU632_RS25525at 37.127 kb on + strand, within LU632_RS25525at 37.128 kb on - strand, within LU632_RS25525at 37.311 kb on + strand, within LU632_RS25525at 37.312 kb on - strand, within LU632_RS25525at 37.349 kb on + strand, within LU632_RS25525at 37.349 kb on + strand, within LU632_RS25525at 37.349 kb on + strand, within LU632_RS25525at 37.349 kb on + strand, within LU632_RS25525at 37.349 kb on + strand, within LU632_RS25525at 37.350 kb on - strand, within LU632_RS25525at 37.350 kb on - strand, within LU632_RS25525at 37.350 kb on - strand, within LU632_RS25525at 37.350 kb on - strand, within LU632_RS25525at 37.352 kb on - strand, within LU632_RS25525at 37.397 kb on - strand, within LU632_RS25525at 37.417 kb on - strand, within LU632_RS25525at 37.485 kb on - strand, within LU632_RS25525at 37.556 kb on + strand, within LU632_RS25525at 37.556 kb on + strand, within LU632_RS25525at 37.557 kb on - strand, within LU632_RS25525at 37.599 kb on - strand, within LU632_RS25525at 37.612 kb on + strand, within LU632_RS25525at 37.638 kb on - strand, within LU632_RS25525at 37.657 kb on - strand, within LU632_RS25525at 37.657 kb on - strand, within LU632_RS25525at 37.664 kb on - strand, within LU632_RS25525at 37.814 kb on + strandat 37.814 kb on + strandat 37.843 kb on + strandat 37.843 kb on + strandat 37.843 kb on + strandat 37.843 kb on + strandat 37.844 kb on - strandat 37.844 kb on - strandat 37.861 kb on + strandat 37.951 kb on - strand, within LU632_RS25530at 37.975 kb on + strand, within LU632_RS25530at 37.975 kb on + strand, within LU632_RS25530at 37.975 kb on + strand, within LU632_RS25530at 38.128 kb on + strand, within LU632_RS25530at 38.129 kb on - strand, within LU632_RS25530at 38.262 kb on - strand, within LU632_RS25530at 38.262 kb on - strand, within LU632_RS25530at 38.265 kb on + strand, within LU632_RS25530at 38.266 kb on - strand, within LU632_RS25530at 38.369 kb on + strand, within LU632_RS25530at 38.369 kb on + strand, within LU632_RS25530at 38.369 kb on + strand, within LU632_RS25530at 38.369 kb on + strand, within LU632_RS25530at 38.370 kb on - strand, within LU632_RS25530at 38.370 kb on - strand, within LU632_RS25530at 38.370 kb on - strand, within LU632_RS25530at 38.370 kb on - strand, within LU632_RS25530at 38.370 kb on - strand, within LU632_RS25530at 38.370 kb on - strand, within LU632_RS25530at 38.370 kb on - strand, within LU632_RS25530at 38.490 kb on + strandat 38.520 kb on + strandat 38.521 kb on - strandat 38.521 kb on - strandat 38.523 kb on - strandat 38.538 kb on - strandat 38.541 kb on + strandat 38.541 kb on + strandat 38.585 kb on + strandat 38.585 kb on + strandat 38.586 kb on - strandat 38.588 kb on + strandat 38.589 kb on - strandat 38.589 kb on - strandat 38.589 kb on - strandat 38.645 kb on + strandat 38.646 kb on - strandat 38.672 kb on + strand, within LU632_RS25535at 38.672 kb on + strand, within LU632_RS25535at 38.750 kb on + strand, within LU632_RS25535at 38.847 kb on - strand, within LU632_RS25535

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Per-strain Table

Position Strand Gene LocusTag Fraction survival 4C, 24 hrs
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35,786 + LU632_RS25520 0.22 -0.1
35,786 + LU632_RS25520 0.22 +0.8
35,786 + LU632_RS25520 0.22 -0.1
35,787 - LU632_RS25520 0.22 -0.2
35,787 - LU632_RS25520 0.22 +0.1
35,833 + LU632_RS25520 0.26 -0.8
35,853 - LU632_RS25520 0.27 +0.6
35,959 - LU632_RS25520 0.36 -0.6
35,981 + LU632_RS25520 0.37 +1.8
35,982 - LU632_RS25520 0.38 +0.8
36,033 + LU632_RS25520 0.42 +0.6
36,087 + LU632_RS25520 0.46 +0.1
36,087 + LU632_RS25520 0.46 +0.4
36,087 + LU632_RS25520 0.46 -0.0
36,087 + LU632_RS25520 0.46 -2.2
36,087 + LU632_RS25520 0.46 +0.1
36,087 + LU632_RS25520 0.46 +0.0
36,087 + LU632_RS25520 0.46 -0.2
36,087 + LU632_RS25520 0.46 +1.8
36,087 + LU632_RS25520 0.46 +0.5
36,088 - LU632_RS25520 0.46 +0.5
36,088 - LU632_RS25520 0.46 +0.7
36,088 - LU632_RS25520 0.46 -0.8
36,088 - LU632_RS25520 0.46 -0.2
36,123 + LU632_RS25520 0.49 -0.9
36,124 - LU632_RS25520 0.49 +0.8
36,244 - LU632_RS25520 0.58 +0.9
36,244 - LU632_RS25520 0.58 +0.5
36,275 + LU632_RS25520 0.61 +0.1
36,275 + LU632_RS25520 0.61 +0.8
36,275 + LU632_RS25520 0.61 +1.1
36,276 - LU632_RS25520 0.61 -0.5
36,276 - LU632_RS25520 0.61 -0.2
36,276 - LU632_RS25520 0.61 -1.2
36,276 - LU632_RS25520 0.61 +0.8
36,276 - LU632_RS25520 0.61 -2.0
36,305 + LU632_RS25520 0.63 -0.0
36,305 + LU632_RS25520 0.63 -0.2
36,305 + LU632_RS25520 0.63 +0.1
36,306 - LU632_RS25520 0.63 -1.2
36,306 - LU632_RS25520 0.63 -0.4
36,306 - LU632_RS25520 0.63 -0.7
36,309 + LU632_RS25520 0.63 -1.0
36,309 + LU632_RS25520 0.63 -0.5
36,361 + LU632_RS25520 0.67 +0.4
36,372 + LU632_RS25520 0.68 -0.0
36,373 - LU632_RS25520 0.68 +1.1
36,373 - LU632_RS25520 0.68 -0.1
36,376 - LU632_RS25520 0.69 +0.8
36,411 - LU632_RS25520 0.71 -1.8
36,411 - LU632_RS25520 0.71 -0.5
36,518 + LU632_RS25520 0.80 -0.6
36,521 + LU632_RS25520 0.80 +1.1
36,522 - LU632_RS25520 0.80 -0.8
36,539 + LU632_RS25520 0.81 -0.9
36,544 + LU632_RS25520 0.82 -0.2
36,545 - LU632_RS25520 0.82 +1.1
36,545 - LU632_RS25520 0.82 +0.9
36,545 - LU632_RS25520 0.82 -5.6
36,545 - LU632_RS25520 0.82 -0.6
36,757 - +0.2
36,758 + -0.1
36,758 + -0.7
36,758 + -1.8
36,759 - +1.4
36,806 + +0.4
36,809 + +1.4
36,810 - -0.1
36,881 + +0.1
36,882 - LU632_RS25525 0.10 +0.8
36,883 + LU632_RS25525 0.10 +0.6
36,883 + LU632_RS25525 0.10 -1.2
36,884 - LU632_RS25525 0.10 +1.0
36,884 - LU632_RS25525 0.10 +0.1
36,884 - LU632_RS25525 0.10 -0.2
36,898 + LU632_RS25525 0.12 -1.0
36,898 + LU632_RS25525 0.12 -1.6
36,898 + LU632_RS25525 0.12 +1.8
36,899 - LU632_RS25525 0.12 +0.6
36,899 - LU632_RS25525 0.12 +0.3
36,899 - LU632_RS25525 0.12 -0.5
36,902 + LU632_RS25525 0.12 +1.4
36,903 - LU632_RS25525 0.12 +1.4
37,026 - LU632_RS25525 0.23 +0.8
37,031 + LU632_RS25525 0.24 +0.7
37,031 + LU632_RS25525 0.24 +0.2
37,031 + LU632_RS25525 0.24 -1.2
37,032 - LU632_RS25525 0.24 -0.8
37,032 - LU632_RS25525 0.24 -0.4
37,074 - LU632_RS25525 0.28 -1.5
37,074 - LU632_RS25525 0.28 +0.5
37,119 + LU632_RS25525 0.32 -0.8
37,120 - LU632_RS25525 0.32 +0.4
37,127 + LU632_RS25525 0.33 +0.1
37,127 + LU632_RS25525 0.33 +1.8
37,128 - LU632_RS25525 0.33 -1.0
37,311 + LU632_RS25525 0.50 -0.5
37,312 - LU632_RS25525 0.50 +0.9
37,349 + LU632_RS25525 0.54 +0.4
37,349 + LU632_RS25525 0.54 -0.0
37,349 + LU632_RS25525 0.54 -0.3
37,349 + LU632_RS25525 0.54 -0.2
37,349 + LU632_RS25525 0.54 +0.3
37,350 - LU632_RS25525 0.54 +0.3
37,350 - LU632_RS25525 0.54 -1.4
37,350 - LU632_RS25525 0.54 +0.8
37,350 - LU632_RS25525 0.54 +0.9
37,352 - LU632_RS25525 0.54 +0.3
37,397 - LU632_RS25525 0.58 -0.8
37,417 - LU632_RS25525 0.60 +0.3
37,485 - LU632_RS25525 0.66 +0.3
37,556 + LU632_RS25525 0.73 +0.3
37,556 + LU632_RS25525 0.73 -0.2
37,557 - LU632_RS25525 0.73 -0.2
37,599 - LU632_RS25525 0.77 +0.4
37,612 + LU632_RS25525 0.78 +1.8
37,638 - LU632_RS25525 0.80 +1.1
37,657 - LU632_RS25525 0.82 +0.3
37,657 - LU632_RS25525 0.82 +0.3
37,664 - LU632_RS25525 0.83 -1.2
37,814 + +1.8
37,814 + -0.2
37,843 + +0.1
37,843 + -0.2
37,843 + -1.2
37,843 + +0.3
37,844 - +2.1
37,844 - +0.8
37,861 + -0.2
37,951 - LU632_RS25530 0.17 +1.7
37,975 + LU632_RS25530 0.21 -1.0
37,975 + LU632_RS25530 0.21 +0.1
37,975 + LU632_RS25530 0.21 -0.8
38,128 + LU632_RS25530 0.44 -0.2
38,129 - LU632_RS25530 0.45 -0.8
38,262 - LU632_RS25530 0.65 -1.2
38,262 - LU632_RS25530 0.65 +0.4
38,265 + LU632_RS25530 0.66 -1.5
38,266 - LU632_RS25530 0.66 -0.2
38,369 + LU632_RS25530 0.82 +0.4
38,369 + LU632_RS25530 0.82 +1.5
38,369 + LU632_RS25530 0.82 +2.1
38,369 + LU632_RS25530 0.82 +0.2
38,370 - LU632_RS25530 0.82 +0.8
38,370 - LU632_RS25530 0.82 -0.5
38,370 - LU632_RS25530 0.82 -0.5
38,370 - LU632_RS25530 0.82 +1.2
38,370 - LU632_RS25530 0.82 -0.4
38,370 - LU632_RS25530 0.82 +0.2
38,370 - LU632_RS25530 0.82 +0.2
38,490 + +0.0
38,520 + -0.5
38,521 - -0.2
38,521 - -2.2
38,523 - +1.9
38,538 - +1.2
38,541 + +0.4
38,541 + +1.1
38,585 + -0.2
38,585 + -0.0
38,586 - +0.6
38,588 + +0.7
38,589 - +0.1
38,589 - -0.1
38,589 - +0.7
38,645 + +0.5
38,646 - +0.5
38,672 + LU632_RS25535 0.11 +0.3
38,672 + LU632_RS25535 0.11 -0.0
38,750 + LU632_RS25535 0.18 +0.8
38,847 - LU632_RS25535 0.26 +0.6

Or see this region's nucleotide sequence