Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21760

Experiment: survival 4C, 24 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS21755 and LU632_RS21760 are separated by 125 nucleotidesLU632_RS21760 and LU632_RS21765 are separated by 493 nucleotidesLU632_RS21765 and LU632_RS21770 overlap by 3 nucleotides LU632_RS21755: LU632_RS21755 - adenylosuccinate synthase, at 4,159,619 to 4,160,917 _RS21755 LU632_RS21760: LU632_RS21760 - DUF2065 domain-containing protein, at 4,161,043 to 4,161,246 _RS21760 LU632_RS21765: LU632_RS21765 - terminase large subunit, at 4,161,740 to 4,162,033 _RS21765 LU632_RS21770: LU632_RS21770 - phage major capsid protein, at 4,162,031 to 4,162,177 _RS21770 Position (kb) 4161 4162Strain fitness (log2 ratio) -2 -1 0 1 2at 4160.110 kb on - strand, within LU632_RS21755at 4160.129 kb on + strand, within LU632_RS21755at 4160.129 kb on + strand, within LU632_RS21755at 4160.129 kb on + strand, within LU632_RS21755at 4160.129 kb on + strand, within LU632_RS21755at 4160.130 kb on - strand, within LU632_RS21755at 4160.130 kb on - strand, within LU632_RS21755at 4160.130 kb on - strand, within LU632_RS21755at 4160.131 kb on + strand, within LU632_RS21755at 4160.131 kb on + strand, within LU632_RS21755at 4160.131 kb on + strand, within LU632_RS21755at 4160.131 kb on + strand, within LU632_RS21755at 4160.131 kb on + strand, within LU632_RS21755at 4160.132 kb on - strand, within LU632_RS21755at 4160.132 kb on - strand, within LU632_RS21755at 4160.132 kb on - strand, within LU632_RS21755at 4160.132 kb on - strand, within LU632_RS21755at 4160.134 kb on - strand, within LU632_RS21755at 4160.134 kb on - strand, within LU632_RS21755at 4160.134 kb on - strand, within LU632_RS21755at 4160.134 kb on - strand, within LU632_RS21755at 4160.134 kb on - strand, within LU632_RS21755at 4160.134 kb on - strand, within LU632_RS21755at 4160.186 kb on - strand, within LU632_RS21755at 4160.188 kb on + strand, within LU632_RS21755at 4160.191 kb on + strand, within LU632_RS21755at 4160.191 kb on + strand, within LU632_RS21755at 4160.192 kb on - strand, within LU632_RS21755at 4160.192 kb on - strand, within LU632_RS21755at 4160.206 kb on - strand, within LU632_RS21755at 4160.212 kb on - strand, within LU632_RS21755at 4160.317 kb on + strand, within LU632_RS21755at 4160.368 kb on - strand, within LU632_RS21755at 4160.636 kb on + strand, within LU632_RS21755at 4160.753 kb on + strand, within LU632_RS21755at 4160.753 kb on + strand, within LU632_RS21755at 4160.753 kb on + strand, within LU632_RS21755at 4160.754 kb on - strand, within LU632_RS21755at 4160.754 kb on - strand, within LU632_RS21755at 4160.830 kb on - strandat 4160.952 kb on + strandat 4160.988 kb on + strandat 4161.074 kb on + strand, within LU632_RS21760at 4161.074 kb on + strand, within LU632_RS21760at 4161.074 kb on + strand, within LU632_RS21760at 4161.075 kb on - strand, within LU632_RS21760at 4161.075 kb on - strand, within LU632_RS21760at 4161.075 kb on - strand, within LU632_RS21760at 4161.082 kb on - strand, within LU632_RS21760at 4161.214 kb on + strand, within LU632_RS21760at 4161.214 kb on + strand, within LU632_RS21760at 4161.232 kb on + strandat 4161.232 kb on + strandat 4161.234 kb on + strandat 4161.234 kb on + strandat 4161.234 kb on + strandat 4161.234 kb on + strandat 4161.234 kb on + strandat 4161.235 kb on - strandat 4161.235 kb on - strandat 4161.444 kb on - strandat 4161.477 kb on + strandat 4161.477 kb on + strandat 4161.636 kb on + strandat 4161.672 kb on + strandat 4161.953 kb on - strand, within LU632_RS21765at 4161.966 kb on - strand, within LU632_RS21765at 4162.069 kb on + strand, within LU632_RS21770

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Per-strain Table

Position Strand Gene LocusTag Fraction survival 4C, 24 hrs
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4,160,110 - LU632_RS21755 0.38 +0.4
4,160,129 + LU632_RS21755 0.39 +1.1
4,160,129 + LU632_RS21755 0.39 +0.1
4,160,129 + LU632_RS21755 0.39 +0.2
4,160,129 + LU632_RS21755 0.39 +1.6
4,160,130 - LU632_RS21755 0.39 +0.1
4,160,130 - LU632_RS21755 0.39 +0.7
4,160,130 - LU632_RS21755 0.39 +1.1
4,160,131 + LU632_RS21755 0.39 -0.2
4,160,131 + LU632_RS21755 0.39 +1.1
4,160,131 + LU632_RS21755 0.39 -0.9
4,160,131 + LU632_RS21755 0.39 +2.2
4,160,131 + LU632_RS21755 0.39 -0.3
4,160,132 - LU632_RS21755 0.39 +0.4
4,160,132 - LU632_RS21755 0.39 +1.6
4,160,132 - LU632_RS21755 0.39 -1.5
4,160,132 - LU632_RS21755 0.39 +1.2
4,160,134 - LU632_RS21755 0.40 +0.9
4,160,134 - LU632_RS21755 0.40 +1.0
4,160,134 - LU632_RS21755 0.40 +0.6
4,160,134 - LU632_RS21755 0.40 +2.2
4,160,134 - LU632_RS21755 0.40 -0.2
4,160,134 - LU632_RS21755 0.40 +1.1
4,160,186 - LU632_RS21755 0.44 +0.9
4,160,188 + LU632_RS21755 0.44 -1.1
4,160,191 + LU632_RS21755 0.44 +0.8
4,160,191 + LU632_RS21755 0.44 +0.3
4,160,192 - LU632_RS21755 0.44 +1.2
4,160,192 - LU632_RS21755 0.44 +1.4
4,160,206 - LU632_RS21755 0.45 +1.9
4,160,212 - LU632_RS21755 0.46 +1.3
4,160,317 + LU632_RS21755 0.54 +1.8
4,160,368 - LU632_RS21755 0.58 +0.9
4,160,636 + LU632_RS21755 0.78 +0.1
4,160,753 + LU632_RS21755 0.87 +0.8
4,160,753 + LU632_RS21755 0.87 +0.3
4,160,753 + LU632_RS21755 0.87 +0.1
4,160,754 - LU632_RS21755 0.87 +0.9
4,160,754 - LU632_RS21755 0.87 +2.0
4,160,830 - +0.5
4,160,952 + +1.4
4,160,988 + +0.6
4,161,074 + LU632_RS21760 0.15 +0.2
4,161,074 + LU632_RS21760 0.15 +0.1
4,161,074 + LU632_RS21760 0.15 -0.1
4,161,075 - LU632_RS21760 0.16 +0.1
4,161,075 - LU632_RS21760 0.16 +0.3
4,161,075 - LU632_RS21760 0.16 +1.1
4,161,082 - LU632_RS21760 0.19 +0.5
4,161,214 + LU632_RS21760 0.84 -0.4
4,161,214 + LU632_RS21760 0.84 +0.5
4,161,232 + -1.0
4,161,232 + -0.7
4,161,234 + +0.9
4,161,234 + -1.3
4,161,234 + +0.5
4,161,234 + +1.6
4,161,234 + +0.9
4,161,235 - +0.0
4,161,235 - +0.4
4,161,444 - -0.7
4,161,477 + +0.2
4,161,477 + -2.2
4,161,636 + +0.0
4,161,672 + -0.7
4,161,953 - LU632_RS21765 0.72 +0.6
4,161,966 - LU632_RS21765 0.77 -0.3
4,162,069 + LU632_RS21770 0.26 +0.8

Or see this region's nucleotide sequence