Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS20170 and LU632_RS20175 overlap by 71 nucleotides LU632_RS20175 and LU632_RS20180 are separated by 203 nucleotides LU632_RS20180 and LU632_RS20185 are separated by 44 nucleotides LU632_RS20185 and LU632_RS20190 overlap by 4 nucleotides LU632_RS20190 and LU632_RS20195 are separated by 231 nucleotides
LU632_RS20165: LU632_RS20165 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 3,840,197 to 3,840,466
_RS20165
LU632_RS20170: LU632_RS20170 - four-carbon acid sugar kinase family protein, at 3,840,429 to 3,840,602
_RS20170
LU632_RS20175: LU632_RS20175 - hypothetical protein, at 3,840,532 to 3,840,822
_RS20175
LU632_RS20180: LU632_RS20180 - iron-containing alcohol dehydrogenase, at 3,841,026 to 3,841,418
_RS20180
LU632_RS20185: LU632_RS20185 - YhcH/YjgK/YiaL family protein, at 3,841,463 to 3,841,937
_RS20185
LU632_RS20190: LU632_RS20190 - SDR family oxidoreductase, at 3,841,934 to 3,842,591
_RS20190
LU632_RS20195: LU632_RS20195 - IS1 family transposase, at 3,842,823 to 3,843,326
_RS20195
Position (kb) 3841
3842 Strain fitness (log2 ratio) -1
0
1
2 at 3840.600 kb on + strand at 3840.603 kb on - strand, within LU632_RS20175 at 3840.864 kb on - strand at 3841.160 kb on + strand, within LU632_RS20180 at 3841.280 kb on - strand, within LU632_RS20180 at 3841.282 kb on + strand, within LU632_RS20180 at 3841.283 kb on - strand, within LU632_RS20180 at 3841.577 kb on - strand, within LU632_RS20185 at 3841.652 kb on - strand, within LU632_RS20185 at 3841.670 kb on + strand, within LU632_RS20185 at 3841.773 kb on + strand, within LU632_RS20185 at 3841.773 kb on + strand, within LU632_RS20185 at 3841.774 kb on - strand, within LU632_RS20185 at 3842.066 kb on - strand, within LU632_RS20190 at 3842.103 kb on + strand, within LU632_RS20190 at 3842.115 kb on + strand, within LU632_RS20190 at 3842.133 kb on + strand, within LU632_RS20190 at 3842.133 kb on + strand, within LU632_RS20190 at 3842.134 kb on - strand, within LU632_RS20190 at 3842.134 kb on - strand, within LU632_RS20190 at 3842.220 kb on + strand, within LU632_RS20190 at 3842.220 kb on + strand, within LU632_RS20190 at 3842.220 kb on + strand, within LU632_RS20190 at 3842.220 kb on + strand, within LU632_RS20190 at 3842.224 kb on + strand, within LU632_RS20190 at 3842.225 kb on - strand, within LU632_RS20190 at 3842.336 kb on + strand, within LU632_RS20190 at 3842.397 kb on + strand, within LU632_RS20190 at 3842.397 kb on + strand, within LU632_RS20190 at 3842.397 kb on + strand, within LU632_RS20190 at 3842.398 kb on - strand, within LU632_RS20190 at 3842.484 kb on + strand, within LU632_RS20190 at 3842.485 kb on - strand, within LU632_RS20190 at 3842.485 kb on - strand, within LU632_RS20190 at 3842.486 kb on + strand, within LU632_RS20190 at 3842.487 kb on - strand, within LU632_RS20190 at 3842.589 kb on + strand at 3842.590 kb on - strand at 3842.596 kb on - strand at 3842.602 kb on + strand at 3842.647 kb on + strand at 3842.648 kb on - strand at 3842.648 kb on - strand at 3842.673 kb on + strand at 3842.720 kb on - strand at 3842.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 3,840,600 + +0.0 3,840,603 - LU632_RS20175 0.24 +0.3 3,840,864 - -0.2 3,841,160 + LU632_RS20180 0.34 -0.4 3,841,280 - LU632_RS20180 0.65 -0.8 3,841,282 + LU632_RS20180 0.65 -0.2 3,841,283 - LU632_RS20180 0.65 -0.3 3,841,577 - LU632_RS20185 0.24 -0.7 3,841,652 - LU632_RS20185 0.40 +0.0 3,841,670 + LU632_RS20185 0.44 -1.6 3,841,773 + LU632_RS20185 0.65 -1.0 3,841,773 + LU632_RS20185 0.65 -1.0 3,841,774 - LU632_RS20185 0.65 -0.6 3,842,066 - LU632_RS20190 0.20 -1.3 3,842,103 + LU632_RS20190 0.26 +1.6 3,842,115 + LU632_RS20190 0.28 +0.0 3,842,133 + LU632_RS20190 0.30 -0.9 3,842,133 + LU632_RS20190 0.30 -0.5 3,842,134 - LU632_RS20190 0.30 -1.4 3,842,134 - LU632_RS20190 0.30 +2.0 3,842,220 + LU632_RS20190 0.43 -1.0 3,842,220 + LU632_RS20190 0.43 +0.6 3,842,220 + LU632_RS20190 0.43 +2.0 3,842,220 + LU632_RS20190 0.43 -0.3 3,842,224 + LU632_RS20190 0.44 +0.4 3,842,225 - LU632_RS20190 0.44 +0.0 3,842,336 + LU632_RS20190 0.61 +1.0 3,842,397 + LU632_RS20190 0.70 -0.4 3,842,397 + LU632_RS20190 0.70 +0.0 3,842,397 + LU632_RS20190 0.70 +0.8 3,842,398 - LU632_RS20190 0.71 +0.0 3,842,484 + LU632_RS20190 0.84 +0.1 3,842,485 - LU632_RS20190 0.84 +0.8 3,842,485 - LU632_RS20190 0.84 +0.4 3,842,486 + LU632_RS20190 0.84 +0.4 3,842,487 - LU632_RS20190 0.84 -1.0 3,842,589 + +0.5 3,842,590 - +2.0 3,842,596 - -0.3 3,842,602 + -1.2 3,842,647 + -0.0 3,842,648 - +1.6 3,842,648 - +1.0 3,842,673 + -0.1 3,842,720 - +0.0 3,842,722 - -0.1
Or see this region's nucleotide sequence