Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS17485 and yeiP are separated by 71 nucleotides yeiP and LU632_RS17495 are separated by 187 nucleotides LU632_RS17495 and LU632_RS17500 are separated by 38 nucleotides LU632_RS17500 and LU632_RS17505 overlap by 4 nucleotides
LU632_RS17485: LU632_RS17485 - hypothetical protein, at 3,288,459 to 3,288,758
_RS17485
LU632_RS17490: yeiP - elongation factor P-like protein YeiP, at 3,288,830 to 3,289,402
yeiP
LU632_RS17495: LU632_RS17495 - YkgJ family cysteine cluster protein, at 3,289,590 to 3,289,718
_RS17495
LU632_RS17500: LU632_RS17500 - pyocin activator PrtN family protein, at 3,289,757 to 3,290,008
_RS17500
LU632_RS17505: LU632_RS17505 - DEAD/DEAH box helicase, at 3,290,005 to 3,291,312
_RS17505
Position (kb) 3289
3290 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3288.703 kb on + strand, within LU632_RS17485 at 3288.703 kb on + strand, within LU632_RS17485 at 3288.704 kb on - strand, within LU632_RS17485 at 3288.746 kb on + strand at 3288.750 kb on + strand at 3288.750 kb on + strand at 3288.750 kb on + strand at 3288.779 kb on + strand at 3288.780 kb on - strand at 3288.782 kb on + strand at 3288.783 kb on - strand at 3288.783 kb on - strand at 3288.783 kb on - strand at 3288.785 kb on - strand at 3288.804 kb on - strand at 3288.831 kb on + strand at 3288.832 kb on - strand at 3288.847 kb on + strand at 3288.849 kb on + strand at 3289.158 kb on + strand, within yeiP at 3289.158 kb on + strand, within yeiP at 3289.159 kb on - strand, within yeiP at 3289.159 kb on - strand, within yeiP at 3289.159 kb on - strand, within yeiP at 3289.176 kb on + strand, within yeiP at 3289.285 kb on + strand, within yeiP at 3289.285 kb on + strand, within yeiP at 3289.286 kb on - strand, within yeiP at 3289.286 kb on - strand, within yeiP at 3289.287 kb on + strand, within yeiP at 3289.287 kb on + strand, within yeiP at 3289.405 kb on + strand at 3289.405 kb on + strand at 3289.502 kb on - strand at 3289.538 kb on + strand at 3289.558 kb on + strand at 3289.576 kb on + strand at 3289.577 kb on - strand at 3289.577 kb on - strand at 3289.593 kb on + strand at 3289.593 kb on + strand at 3289.594 kb on - strand at 3289.622 kb on + strand, within LU632_RS17495 at 3289.623 kb on - strand, within LU632_RS17495 at 3289.623 kb on - strand, within LU632_RS17495 at 3289.686 kb on + strand, within LU632_RS17495 at 3289.689 kb on - strand, within LU632_RS17495 at 3289.689 kb on - strand, within LU632_RS17495 at 3289.755 kb on + strand at 3289.755 kb on + strand at 3289.755 kb on + strand at 3289.756 kb on - strand at 3289.756 kb on - strand at 3289.863 kb on - strand, within LU632_RS17500 at 3289.935 kb on + strand, within LU632_RS17500 at 3290.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 3,288,703 + LU632_RS17485 0.81 -2.6 3,288,703 + LU632_RS17485 0.81 -0.0 3,288,704 - LU632_RS17485 0.82 -1.0 3,288,746 + +0.2 3,288,750 + -1.6 3,288,750 + -0.0 3,288,750 + -0.2 3,288,779 + -0.0 3,288,780 - -0.7 3,288,782 + +1.2 3,288,783 - +0.7 3,288,783 - +0.9 3,288,783 - +1.2 3,288,785 - -0.4 3,288,804 - -1.3 3,288,831 + +0.7 3,288,832 - -0.8 3,288,847 + -2.2 3,288,849 + +1.0 3,289,158 + yeiP LU632_RS17490 0.57 -0.0 3,289,158 + yeiP LU632_RS17490 0.57 +1.2 3,289,159 - yeiP LU632_RS17490 0.57 +0.1 3,289,159 - yeiP LU632_RS17490 0.57 +0.5 3,289,159 - yeiP LU632_RS17490 0.57 +0.5 3,289,176 + yeiP LU632_RS17490 0.60 -0.4 3,289,285 + yeiP LU632_RS17490 0.79 +0.3 3,289,285 + yeiP LU632_RS17490 0.79 -2.0 3,289,286 - yeiP LU632_RS17490 0.80 -0.3 3,289,286 - yeiP LU632_RS17490 0.80 +1.2 3,289,287 + yeiP LU632_RS17490 0.80 +0.6 3,289,287 + yeiP LU632_RS17490 0.80 +2.0 3,289,405 + -0.0 3,289,405 + -0.0 3,289,502 - +0.7 3,289,538 + +2.0 3,289,558 + -1.5 3,289,576 + -0.3 3,289,577 - -0.1 3,289,577 - +0.2 3,289,593 + -0.3 3,289,593 + +2.6 3,289,594 - -0.9 3,289,622 + LU632_RS17495 0.25 +1.0 3,289,623 - LU632_RS17495 0.26 -0.4 3,289,623 - LU632_RS17495 0.26 -0.0 3,289,686 + LU632_RS17495 0.74 +0.1 3,289,689 - LU632_RS17495 0.77 +0.2 3,289,689 - LU632_RS17495 0.77 -1.7 3,289,755 + +1.2 3,289,755 + +1.2 3,289,755 + +1.6 3,289,756 - -0.4 3,289,756 - +0.8 3,289,863 - LU632_RS17500 0.42 +1.6 3,289,935 + LU632_RS17500 0.71 +0.4 3,290,002 + -0.0
Or see this region's nucleotide sequence