Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS09550 and gsiA overlap by 4 nucleotides gsiA and gsiB are separated by 42 nucleotides
LU632_RS09550: LU632_RS09550 - isoaspartyl peptidase/L-asparaginase, at 1,807,232 to 1,808,200
_RS09550
LU632_RS09555: gsiA - glutathione ABC transporter ATP-binding protein GsiA, at 1,808,197 to 1,810,059
gsiA
LU632_RS09560: gsiB - glutathione ABC transporter substrate-binding protein GsiB, at 1,810,102 to 1,811,634
gsiB
Position (kb) 1808
1809
1810
1811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1807.314 kb on - strand at 1807.315 kb on + strand at 1807.316 kb on - strand at 1807.425 kb on + strand, within LU632_RS09550 at 1807.501 kb on + strand, within LU632_RS09550 at 1807.714 kb on + strand, within LU632_RS09550 at 1807.769 kb on - strand, within LU632_RS09550 at 1807.899 kb on - strand, within LU632_RS09550 at 1807.899 kb on - strand, within LU632_RS09550 at 1807.918 kb on - strand, within LU632_RS09550 at 1807.970 kb on + strand, within LU632_RS09550 at 1807.971 kb on - strand, within LU632_RS09550 at 1807.971 kb on - strand, within LU632_RS09550 at 1808.035 kb on - strand, within LU632_RS09550 at 1808.125 kb on + strand at 1808.126 kb on - strand at 1808.129 kb on + strand at 1808.129 kb on + strand at 1808.144 kb on + strand at 1808.170 kb on + strand at 1808.174 kb on + strand at 1808.175 kb on - strand at 1808.175 kb on - strand at 1808.175 kb on - strand at 1808.237 kb on + strand at 1808.388 kb on + strand, within gsiA at 1808.389 kb on - strand, within gsiA at 1808.420 kb on + strand, within gsiA at 1808.421 kb on - strand, within gsiA at 1808.438 kb on + strand, within gsiA at 1808.529 kb on - strand, within gsiA at 1808.529 kb on - strand, within gsiA at 1808.565 kb on + strand, within gsiA at 1808.643 kb on - strand, within gsiA at 1808.646 kb on + strand, within gsiA at 1808.646 kb on + strand, within gsiA at 1808.646 kb on + strand, within gsiA at 1808.647 kb on - strand, within gsiA at 1808.647 kb on - strand, within gsiA at 1808.647 kb on - strand, within gsiA at 1808.647 kb on - strand, within gsiA at 1808.647 kb on - strand, within gsiA at 1808.684 kb on + strand, within gsiA at 1808.684 kb on + strand, within gsiA at 1808.742 kb on + strand, within gsiA at 1808.743 kb on - strand, within gsiA at 1808.773 kb on - strand, within gsiA at 1808.787 kb on + strand, within gsiA at 1808.787 kb on + strand, within gsiA at 1808.874 kb on + strand, within gsiA at 1808.918 kb on + strand, within gsiA at 1808.919 kb on - strand, within gsiA at 1808.919 kb on - strand, within gsiA at 1808.919 kb on - strand, within gsiA at 1808.992 kb on + strand, within gsiA at 1808.997 kb on + strand, within gsiA at 1809.342 kb on + strand, within gsiA at 1809.360 kb on + strand, within gsiA at 1809.361 kb on - strand, within gsiA at 1809.361 kb on - strand, within gsiA at 1809.361 kb on - strand, within gsiA at 1809.366 kb on + strand, within gsiA at 1809.430 kb on + strand, within gsiA at 1809.431 kb on - strand, within gsiA at 1809.471 kb on + strand, within gsiA at 1809.471 kb on + strand, within gsiA at 1809.472 kb on - strand, within gsiA at 1809.704 kb on + strand, within gsiA at 1809.705 kb on - strand, within gsiA at 1809.725 kb on + strand, within gsiA at 1809.768 kb on + strand, within gsiA at 1809.768 kb on + strand, within gsiA at 1809.769 kb on - strand, within gsiA at 1809.769 kb on - strand, within gsiA at 1809.770 kb on + strand, within gsiA at 1809.771 kb on - strand, within gsiA at 1809.811 kb on + strand, within gsiA at 1809.811 kb on + strand, within gsiA at 1809.811 kb on + strand, within gsiA at 1809.811 kb on + strand, within gsiA at 1809.811 kb on - strand, within gsiA at 1809.812 kb on - strand, within gsiA at 1809.874 kb on + strand at 1809.888 kb on - strand at 1809.956 kb on + strand at 1809.957 kb on - strand at 1809.957 kb on - strand at 1810.027 kb on + strand at 1810.027 kb on + strand at 1810.027 kb on + strand at 1810.028 kb on - strand at 1810.028 kb on - strand at 1810.028 kb on - strand at 1810.119 kb on + strand at 1810.119 kb on + strand at 1810.119 kb on + strand at 1810.271 kb on - strand, within gsiB at 1810.271 kb on - strand, within gsiB at 1810.271 kb on - strand, within gsiB at 1810.271 kb on - strand, within gsiB at 1810.271 kb on - strand, within gsiB at 1810.299 kb on + strand, within gsiB at 1810.330 kb on + strand, within gsiB at 1810.330 kb on + strand, within gsiB at 1810.331 kb on - strand, within gsiB at 1810.331 kb on - strand, within gsiB at 1810.342 kb on - strand, within gsiB at 1810.353 kb on + strand, within gsiB at 1810.354 kb on - strand, within gsiB at 1810.471 kb on + strand, within gsiB at 1810.472 kb on - strand, within gsiB at 1810.473 kb on + strand, within gsiB at 1810.473 kb on + strand, within gsiB at 1810.474 kb on - strand, within gsiB at 1810.616 kb on - strand, within gsiB at 1810.869 kb on - strand, within gsiB at 1810.874 kb on + strand, within gsiB at 1810.966 kb on + strand, within gsiB at 1810.966 kb on + strand, within gsiB at 1810.966 kb on + strand, within gsiB at 1810.967 kb on - strand, within gsiB
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 1,807,314 - -2.4 1,807,315 + -0.5 1,807,316 - -2.7 1,807,425 + LU632_RS09550 0.20 +0.6 1,807,501 + LU632_RS09550 0.28 -0.1 1,807,714 + LU632_RS09550 0.50 +1.2 1,807,769 - LU632_RS09550 0.55 -0.8 1,807,899 - LU632_RS09550 0.69 -3.0 1,807,899 - LU632_RS09550 0.69 -2.1 1,807,918 - LU632_RS09550 0.71 -1.7 1,807,970 + LU632_RS09550 0.76 +0.5 1,807,971 - LU632_RS09550 0.76 -0.1 1,807,971 - LU632_RS09550 0.76 -2.1 1,808,035 - LU632_RS09550 0.83 -0.4 1,808,125 + +0.8 1,808,126 - -0.9 1,808,129 + +0.5 1,808,129 + +2.5 1,808,144 + +0.2 1,808,170 + -0.1 1,808,174 + +1.1 1,808,175 - -2.3 1,808,175 - -1.4 1,808,175 - -2.3 1,808,237 + -0.1 1,808,388 + gsiA LU632_RS09555 0.10 -1.9 1,808,389 - gsiA LU632_RS09555 0.10 -0.4 1,808,420 + gsiA LU632_RS09555 0.12 -1.9 1,808,421 - gsiA LU632_RS09555 0.12 -0.7 1,808,438 + gsiA LU632_RS09555 0.13 -1.5 1,808,529 - gsiA LU632_RS09555 0.18 -1.9 1,808,529 - gsiA LU632_RS09555 0.18 -1.7 1,808,565 + gsiA LU632_RS09555 0.20 -0.7 1,808,643 - gsiA LU632_RS09555 0.24 -1.1 1,808,646 + gsiA LU632_RS09555 0.24 -0.1 1,808,646 + gsiA LU632_RS09555 0.24 -1.5 1,808,646 + gsiA LU632_RS09555 0.24 -1.1 1,808,647 - gsiA LU632_RS09555 0.24 -2.5 1,808,647 - gsiA LU632_RS09555 0.24 -0.1 1,808,647 - gsiA LU632_RS09555 0.24 -1.7 1,808,647 - gsiA LU632_RS09555 0.24 -0.9 1,808,647 - gsiA LU632_RS09555 0.24 -2.2 1,808,684 + gsiA LU632_RS09555 0.26 -0.9 1,808,684 + gsiA LU632_RS09555 0.26 -2.7 1,808,742 + gsiA LU632_RS09555 0.29 -1.9 1,808,743 - gsiA LU632_RS09555 0.29 -0.1 1,808,773 - gsiA LU632_RS09555 0.31 -1.8 1,808,787 + gsiA LU632_RS09555 0.32 -3.2 1,808,787 + gsiA LU632_RS09555 0.32 -2.5 1,808,874 + gsiA LU632_RS09555 0.36 -2.1 1,808,918 + gsiA LU632_RS09555 0.39 -1.1 1,808,919 - gsiA LU632_RS09555 0.39 -0.8 1,808,919 - gsiA LU632_RS09555 0.39 -3.3 1,808,919 - gsiA LU632_RS09555 0.39 -0.1 1,808,992 + gsiA LU632_RS09555 0.43 -1.1 1,808,997 + gsiA LU632_RS09555 0.43 -0.7 1,809,342 + gsiA LU632_RS09555 0.61 -2.7 1,809,360 + gsiA LU632_RS09555 0.62 -1.1 1,809,361 - gsiA LU632_RS09555 0.62 -1.4 1,809,361 - gsiA LU632_RS09555 0.62 -0.5 1,809,361 - gsiA LU632_RS09555 0.62 -1.1 1,809,366 + gsiA LU632_RS09555 0.63 -2.5 1,809,430 + gsiA LU632_RS09555 0.66 -1.7 1,809,431 - gsiA LU632_RS09555 0.66 -1.7 1,809,471 + gsiA LU632_RS09555 0.68 -0.5 1,809,471 + gsiA LU632_RS09555 0.68 -0.5 1,809,472 - gsiA LU632_RS09555 0.68 -1.7 1,809,704 + gsiA LU632_RS09555 0.81 -0.9 1,809,705 - gsiA LU632_RS09555 0.81 -2.7 1,809,725 + gsiA LU632_RS09555 0.82 -0.8 1,809,768 + gsiA LU632_RS09555 0.84 -1.7 1,809,768 + gsiA LU632_RS09555 0.84 -0.1 1,809,769 - gsiA LU632_RS09555 0.84 -1.7 1,809,769 - gsiA LU632_RS09555 0.84 -1.7 1,809,770 + gsiA LU632_RS09555 0.84 -1.5 1,809,771 - gsiA LU632_RS09555 0.84 -2.1 1,809,811 + gsiA LU632_RS09555 0.87 -2.1 1,809,811 + gsiA LU632_RS09555 0.87 -1.9 1,809,811 + gsiA LU632_RS09555 0.87 -0.6 1,809,811 + gsiA LU632_RS09555 0.87 -0.1 1,809,811 - gsiA LU632_RS09555 0.87 -1.6 1,809,812 - gsiA LU632_RS09555 0.87 -2.8 1,809,874 + -1.1 1,809,888 - -2.4 1,809,956 + -1.0 1,809,957 - -0.1 1,809,957 - +0.5 1,810,027 + -0.9 1,810,027 + -2.1 1,810,027 + -1.4 1,810,028 - -2.1 1,810,028 - -0.1 1,810,028 - -1.9 1,810,119 + -0.1 1,810,119 + -1.7 1,810,119 + -0.4 1,810,271 - gsiB LU632_RS09560 0.11 -0.8 1,810,271 - gsiB LU632_RS09560 0.11 +0.9 1,810,271 - gsiB LU632_RS09560 0.11 -0.1 1,810,271 - gsiB LU632_RS09560 0.11 -2.1 1,810,271 - gsiB LU632_RS09560 0.11 -0.1 1,810,299 + gsiB LU632_RS09560 0.13 -1.7 1,810,330 + gsiB LU632_RS09560 0.15 -1.4 1,810,330 + gsiB LU632_RS09560 0.15 -1.4 1,810,331 - gsiB LU632_RS09560 0.15 -1.1 1,810,331 - gsiB LU632_RS09560 0.15 -0.1 1,810,342 - gsiB LU632_RS09560 0.16 -3.1 1,810,353 + gsiB LU632_RS09560 0.16 -1.7 1,810,354 - gsiB LU632_RS09560 0.16 -0.5 1,810,471 + gsiB LU632_RS09560 0.24 -1.9 1,810,472 - gsiB LU632_RS09560 0.24 -1.1 1,810,473 + gsiB LU632_RS09560 0.24 -0.1 1,810,473 + gsiB LU632_RS09560 0.24 -0.9 1,810,474 - gsiB LU632_RS09560 0.24 -2.9 1,810,616 - gsiB LU632_RS09560 0.34 -1.7 1,810,869 - gsiB LU632_RS09560 0.50 -1.1 1,810,874 + gsiB LU632_RS09560 0.50 -1.3 1,810,966 + gsiB LU632_RS09560 0.56 +0.2 1,810,966 + gsiB LU632_RS09560 0.56 -0.8 1,810,966 + gsiB LU632_RS09560 0.56 -1.6 1,810,967 - gsiB LU632_RS09560 0.56 -0.9
Or see this region's nucleotide sequence