Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03725 and LU632_RS03730 are separated by 81 nucleotides LU632_RS03730 and LU632_RS03735 are separated by 87 nucleotides LU632_RS03735 and LU632_RS03740 are separated by 88 nucleotides LU632_RS03740 and LU632_RS03745 are separated by 289 nucleotides
LU632_RS03725: LU632_RS03725 - IS1 family transposase, at 744,064 to 744,761
_RS03725
LU632_RS03730: LU632_RS03730 - GGDEF domain-containing protein, at 744,843 to 745,096
_RS03730
LU632_RS03735: LU632_RS03735 - DUF1435 domain-containing protein, at 745,184 to 745,459
_RS03735
LU632_RS03740: LU632_RS03740 - tRNA-Leu, at 745,548 to 745,634
_RS03740
LU632_RS03745: LU632_RS03745 - hypothetical protein, at 745,924 to 746,439
_RS03745
Position (kb) 745
746 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 744.786 kb on + strand at 744.901 kb on - strand, within LU632_RS03730 at 744.969 kb on - strand, within LU632_RS03730 at 745.062 kb on - strand, within LU632_RS03730 at 745.062 kb on - strand, within LU632_RS03730 at 745.062 kb on - strand, within LU632_RS03730 at 745.127 kb on - strand at 745.134 kb on + strand at 745.140 kb on - strand at 745.161 kb on + strand at 745.165 kb on + strand at 745.166 kb on - strand at 745.178 kb on + strand at 745.178 kb on + strand at 745.179 kb on - strand at 745.239 kb on + strand, within LU632_RS03735 at 745.239 kb on + strand, within LU632_RS03735 at 745.239 kb on + strand, within LU632_RS03735 at 745.260 kb on + strand, within LU632_RS03735 at 745.646 kb on - strand at 745.658 kb on + strand at 745.658 kb on + strand at 745.711 kb on - strand at 745.731 kb on + strand at 746.090 kb on - strand, within LU632_RS03745 at 746.159 kb on + strand, within LU632_RS03745 at 746.393 kb on + strand at 746.394 kb on - strand at 746.449 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 744,786 + -1.0 744,901 - LU632_RS03730 0.23 -1.0 744,969 - LU632_RS03730 0.50 -0.6 745,062 - LU632_RS03730 0.86 +0.5 745,062 - LU632_RS03730 0.86 -1.6 745,062 - LU632_RS03730 0.86 -0.0 745,127 - -0.8 745,134 + -2.8 745,140 - +0.3 745,161 + +0.0 745,165 + -0.3 745,166 - +1.0 745,178 + -0.0 745,178 + +0.1 745,179 - +0.3 745,239 + LU632_RS03735 0.20 +1.8 745,239 + LU632_RS03735 0.20 -0.0 745,239 + LU632_RS03735 0.20 +0.4 745,260 + LU632_RS03735 0.28 +0.7 745,646 - -0.4 745,658 + -1.6 745,658 + +0.3 745,711 - -1.0 745,731 + -1.7 746,090 - LU632_RS03745 0.32 +1.7 746,159 + LU632_RS03745 0.46 +1.4 746,393 + -0.4 746,394 - -0.6 746,449 - -0.0
Or see this region's nucleotide sequence