Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sodA and LU632_RS00130 are separated by 260 nucleotides LU632_RS00130 and LU632_RS00135 overlap by 2 nucleotides LU632_RS00135 and LU632_RS00140 are separated by 71 nucleotides
LU632_RS00125: sodA - superoxide dismutase [Mn], at 23,519 to 24,136
sodA
LU632_RS00130: LU632_RS00130 - ATP-binding cassette domain-containing protein, at 24,397 to 25,389
_RS00130
LU632_RS00135: LU632_RS00135 - YibL family ribosome-associated protein, at 25,388 to 25,750
_RS00135
LU632_RS00140: LU632_RS00140 - MltR family transcriptional regulator, at 25,822 to 26,346
_RS00140
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.446 kb on + strand at 23.455 kb on - strand at 23.455 kb on - strand at 23.468 kb on + strand at 23.472 kb on + strand at 23.472 kb on + strand at 24.134 kb on + strand at 24.135 kb on - strand at 24.135 kb on - strand at 24.138 kb on + strand at 24.139 kb on - strand at 24.207 kb on + strand at 24.208 kb on - strand at 24.301 kb on - strand at 24.305 kb on + strand at 24.310 kb on + strand at 24.311 kb on - strand at 24.377 kb on + strand at 24.378 kb on - strand at 24.384 kb on + strand at 24.397 kb on - strand at 24.429 kb on + strand at 24.430 kb on - strand at 24.527 kb on - strand, within LU632_RS00130 at 24.642 kb on + strand, within LU632_RS00130 at 24.642 kb on + strand, within LU632_RS00130 at 24.643 kb on - strand, within LU632_RS00130 at 24.643 kb on - strand, within LU632_RS00130 at 24.643 kb on - strand, within LU632_RS00130 at 24.706 kb on + strand, within LU632_RS00130 at 24.706 kb on + strand, within LU632_RS00130 at 24.706 kb on + strand, within LU632_RS00130 at 24.707 kb on - strand, within LU632_RS00130 at 24.738 kb on + strand, within LU632_RS00130 at 24.738 kb on + strand, within LU632_RS00130 at 24.814 kb on - strand, within LU632_RS00130 at 24.834 kb on + strand, within LU632_RS00130 at 25.120 kb on - strand, within LU632_RS00130 at 25.123 kb on + strand, within LU632_RS00130 at 25.123 kb on + strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.502 kb on - strand, within LU632_RS00135 at 25.522 kb on + strand, within LU632_RS00135 at 25.757 kb on + strand at 25.771 kb on + strand at 25.771 kb on + strand at 25.772 kb on - strand at 25.772 kb on - strand at 25.772 kb on - strand at 25.772 kb on - strand at 26.090 kb on + strand, within LU632_RS00140 at 26.121 kb on - strand, within LU632_RS00140 at 26.121 kb on - strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.190 kb on - strand, within LU632_RS00140 at 26.190 kb on - strand, within LU632_RS00140 at 26.275 kb on - strand, within LU632_RS00140 at 26.363 kb on + strand at 26.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 23,446 + +0.4 23,455 - -1.3 23,455 - -0.6 23,468 + -1.2 23,472 + -1.6 23,472 + -2.1 24,134 + -1.0 24,135 - +0.6 24,135 - -1.3 24,138 + -0.0 24,139 - -0.6 24,207 + -1.0 24,208 - +0.4 24,301 - -0.4 24,305 + +2.3 24,310 + -1.0 24,311 - +0.0 24,377 + -0.4 24,378 - -1.0 24,384 + +2.6 24,397 - -0.8 24,429 + +1.0 24,430 - -0.7 24,527 - LU632_RS00130 0.13 -0.0 24,642 + LU632_RS00130 0.25 +1.9 24,642 + LU632_RS00130 0.25 +1.6 24,643 - LU632_RS00130 0.25 -2.0 24,643 - LU632_RS00130 0.25 +0.4 24,643 - LU632_RS00130 0.25 -0.7 24,706 + LU632_RS00130 0.31 +1.6 24,706 + LU632_RS00130 0.31 +0.4 24,706 + LU632_RS00130 0.31 -0.2 24,707 - LU632_RS00130 0.31 -0.0 24,738 + LU632_RS00130 0.34 -2.3 24,738 + LU632_RS00130 0.34 +0.1 24,814 - LU632_RS00130 0.42 +0.7 24,834 + LU632_RS00130 0.44 +0.2 25,120 - LU632_RS00130 0.73 +0.2 25,123 + LU632_RS00130 0.73 +0.2 25,123 + LU632_RS00130 0.73 +1.6 25,124 - LU632_RS00130 0.73 +1.0 25,124 - LU632_RS00130 0.73 -0.0 25,124 - LU632_RS00130 0.73 -0.0 25,124 - LU632_RS00130 0.73 -0.0 25,502 - LU632_RS00135 0.31 -0.0 25,522 + LU632_RS00135 0.37 -0.0 25,757 + +0.2 25,771 + +0.0 25,771 + -0.9 25,772 - +0.3 25,772 - -0.4 25,772 - +0.3 25,772 - -0.2 26,090 + LU632_RS00140 0.51 +0.6 26,121 - LU632_RS00140 0.57 -0.0 26,121 - LU632_RS00140 0.57 -0.0 26,189 + LU632_RS00140 0.70 +0.4 26,189 + LU632_RS00140 0.70 +0.7 26,189 + LU632_RS00140 0.70 -0.7 26,189 + LU632_RS00140 0.70 +0.3 26,190 - LU632_RS00140 0.70 -0.2 26,190 - LU632_RS00140 0.70 +2.0 26,275 - LU632_RS00140 0.86 -0.0 26,363 + +0.6 26,364 - -0.4
Or see this region's nucleotide sequence