Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24290

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrep and LU632_RS24285 are separated by 133 nucleotidesLU632_RS24285 and LU632_RS24290 are separated by 128 nucleotidesLU632_RS24290 and LU632_RS24295 are separated by 70 nucleotidesLU632_RS24295 and LU632_RS24300 are separated by 176 nucleotides LU632_RS24280: rep - DNA helicase Rep, at 4,633,815 to 4,635,845 rep LU632_RS24285: LU632_RS24285 - IS6 family transposase, at 4,635,979 to 4,636,683 _RS24285 LU632_RS24290: LU632_RS24290 - type III effector protein, at 4,636,812 to 4,637,402 _RS24290 LU632_RS24295: LU632_RS24295 - hypothetical protein, at 4,637,473 to 4,637,730 _RS24295 LU632_RS24300: LU632_RS24300 - transposase, at 4,637,907 to 4,639,024 _RS24300 Position (kb) 4636 4637 4638Strain fitness (log2 ratio) -2 -1 0 1at 4635.846 kb on - strandat 4636.755 kb on + strandat 4636.814 kb on - strandat 4636.814 kb on - strandat 4636.831 kb on - strandat 4636.831 kb on - strandat 4637.039 kb on - strand, within LU632_RS24290at 4637.119 kb on + strand, within LU632_RS24290at 4637.122 kb on - strand, within LU632_RS24290at 4637.304 kb on + strand, within LU632_RS24290at 4637.335 kb on - strand, within LU632_RS24290at 4637.382 kb on - strandat 4638.194 kb on + strand, within LU632_RS24300at 4638.254 kb on - strand, within LU632_RS24300

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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4,635,846 - -1.0
4,636,755 + -0.9
4,636,814 - +1.0
4,636,814 - +0.3
4,636,831 - -0.1
4,636,831 - +0.9
4,637,039 - LU632_RS24290 0.38 +1.7
4,637,119 + LU632_RS24290 0.52 -0.7
4,637,122 - LU632_RS24290 0.52 -0.3
4,637,304 + LU632_RS24290 0.83 -0.6
4,637,335 - LU632_RS24290 0.88 -2.2
4,637,382 - +0.2
4,638,194 + LU632_RS24300 0.26 +0.0
4,638,254 - LU632_RS24300 0.31 +1.6

Or see this region's nucleotide sequence