Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rep and LU632_RS24285 are separated by 133 nucleotides LU632_RS24285 and LU632_RS24290 are separated by 128 nucleotides LU632_RS24290 and LU632_RS24295 are separated by 70 nucleotides LU632_RS24295 and LU632_RS24300 are separated by 176 nucleotides
LU632_RS24280: rep - DNA helicase Rep, at 4,633,815 to 4,635,845
rep
LU632_RS24285: LU632_RS24285 - IS6 family transposase, at 4,635,979 to 4,636,683
_RS24285
LU632_RS24290: LU632_RS24290 - type III effector protein, at 4,636,812 to 4,637,402
_RS24290
LU632_RS24295: LU632_RS24295 - hypothetical protein, at 4,637,473 to 4,637,730
_RS24295
LU632_RS24300: LU632_RS24300 - transposase, at 4,637,907 to 4,639,024
_RS24300
Position (kb)
4636
4637
4638 Strain fitness (log2 ratio)
-2
-1
0
1 at 4635.846 kb on - strand at 4636.755 kb on + strand at 4636.814 kb on - strand at 4636.814 kb on - strand at 4636.831 kb on - strand at 4636.831 kb on - strand at 4637.039 kb on - strand, within LU632_RS24290 at 4637.119 kb on + strand, within LU632_RS24290 at 4637.122 kb on - strand, within LU632_RS24290 at 4637.304 kb on + strand, within LU632_RS24290 at 4637.335 kb on - strand, within LU632_RS24290 at 4637.382 kb on - strand at 4638.194 kb on + strand, within LU632_RS24300 at 4638.254 kb on - strand, within LU632_RS24300
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 4,635,846 - -1.0 4,636,755 + -0.9 4,636,814 - +1.0 4,636,814 - +0.3 4,636,831 - -0.1 4,636,831 - +0.9 4,637,039 - LU632_RS24290 0.38 +1.7 4,637,119 + LU632_RS24290 0.52 -0.7 4,637,122 - LU632_RS24290 0.52 -0.3 4,637,304 + LU632_RS24290 0.83 -0.6 4,637,335 - LU632_RS24290 0.88 -2.2 4,637,382 - +0.2 4,638,194 + LU632_RS24300 0.26 +0.0 4,638,254 - LU632_RS24300 0.31 +1.6
Or see this region's nucleotide sequence