Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20330

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS20315 and LU632_RS20320 are separated by 70 nucleotidesLU632_RS20320 and LU632_RS20325 overlap by 8 nucleotidesLU632_RS20325 and LU632_RS20330 are separated by 119 nucleotidesLU632_RS20330 and mrdA are separated by 273 nucleotides LU632_RS20315: LU632_RS20315 - hypothetical protein, at 3,866,006 to 3,866,338 _RS20315 LU632_RS20320: LU632_RS20320 - hypothetical protein, at 3,866,409 to 3,866,753 _RS20320 LU632_RS20325: LU632_RS20325 - hypothetical protein, at 3,866,746 to 3,866,940 _RS20325 LU632_RS20330: LU632_RS20330 - IS6 family transposase, at 3,867,060 to 3,867,768 _RS20330 LU632_RS20335: mrdA - penicillin-binding protein 2, at 3,868,042 to 3,869,937 mrdA Position (kb) 3867 3868Strain fitness (log2 ratio) -2 -1 0 1 2at 3866.127 kb on - strand, within LU632_RS20315at 3866.136 kb on + strand, within LU632_RS20315at 3866.136 kb on + strand, within LU632_RS20315at 3866.137 kb on - strand, within LU632_RS20315at 3866.184 kb on + strand, within LU632_RS20315at 3866.184 kb on + strand, within LU632_RS20315at 3866.185 kb on - strand, within LU632_RS20315at 3866.185 kb on - strand, within LU632_RS20315at 3866.313 kb on - strandat 3866.553 kb on + strand, within LU632_RS20320at 3866.754 kb on - strandat 3866.754 kb on - strandat 3866.768 kb on + strand, within LU632_RS20325at 3866.768 kb on + strand, within LU632_RS20325at 3866.768 kb on + strand, within LU632_RS20325at 3866.780 kb on + strand, within LU632_RS20325at 3866.781 kb on - strand, within LU632_RS20325at 3866.826 kb on + strand, within LU632_RS20325at 3866.829 kb on - strand, within LU632_RS20325at 3866.835 kb on + strand, within LU632_RS20325at 3866.861 kb on + strand, within LU632_RS20325at 3867.063 kb on + strandat 3867.090 kb on + strandat 3867.090 kb on + strandat 3867.090 kb on + strandat 3867.090 kb on + strandat 3867.090 kb on + strandat 3867.202 kb on + strand, within LU632_RS20330at 3867.262 kb on + strand, within LU632_RS20330at 3867.919 kb on + strandat 3867.920 kb on - strandat 3867.926 kb on - strandat 3867.938 kb on - strandat 3868.177 kb on - strandat 3868.415 kb on - strand, within mrdAat 3868.511 kb on - strand, within mrdAat 3868.525 kb on + strand, within mrdAat 3868.562 kb on - strand, within mrdAat 3868.588 kb on + strand, within mrdAat 3868.624 kb on + strand, within mrdAat 3868.624 kb on + strand, within mrdAat 3868.625 kb on - strand, within mrdAat 3868.625 kb on - strand, within mrdAat 3868.647 kb on + strand, within mrdAat 3868.709 kb on + strand, within mrdAat 3868.709 kb on + strand, within mrdAat 3868.710 kb on - strand, within mrdAat 3868.710 kb on - strand, within mrdA

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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3,866,127 - LU632_RS20315 0.36 +1.7
3,866,136 + LU632_RS20315 0.39 +2.7
3,866,136 + LU632_RS20315 0.39 -1.3
3,866,137 - LU632_RS20315 0.39 +0.7
3,866,184 + LU632_RS20315 0.53 -1.6
3,866,184 + LU632_RS20315 0.53 +0.3
3,866,185 - LU632_RS20315 0.54 +0.7
3,866,185 - LU632_RS20315 0.54 +1.7
3,866,313 - +0.8
3,866,553 + LU632_RS20320 0.42 +0.7
3,866,754 - +0.9
3,866,754 - +0.7
3,866,768 + LU632_RS20325 0.11 -1.0
3,866,768 + LU632_RS20325 0.11 -1.3
3,866,768 + LU632_RS20325 0.11 +0.4
3,866,780 + LU632_RS20325 0.17 -0.3
3,866,781 - LU632_RS20325 0.18 +0.3
3,866,826 + LU632_RS20325 0.41 -0.3
3,866,829 - LU632_RS20325 0.43 -0.1
3,866,835 + LU632_RS20325 0.46 +0.7
3,866,861 + LU632_RS20325 0.59 -0.0
3,867,063 + -2.6
3,867,090 + +0.1
3,867,090 + -1.3
3,867,090 + +2.3
3,867,090 + +0.5
3,867,090 + -0.3
3,867,202 + LU632_RS20330 0.20 +1.3
3,867,262 + LU632_RS20330 0.28 -1.5
3,867,919 + +0.0
3,867,920 - +0.3
3,867,926 - +0.3
3,867,938 - +0.1
3,868,177 - +0.5
3,868,415 - mrdA LU632_RS20335 0.20 +1.0
3,868,511 - mrdA LU632_RS20335 0.25 +0.4
3,868,525 + mrdA LU632_RS20335 0.25 +0.6
3,868,562 - mrdA LU632_RS20335 0.27 -1.6
3,868,588 + mrdA LU632_RS20335 0.29 -0.8
3,868,624 + mrdA LU632_RS20335 0.31 +0.8
3,868,624 + mrdA LU632_RS20335 0.31 -0.8
3,868,625 - mrdA LU632_RS20335 0.31 -0.7
3,868,625 - mrdA LU632_RS20335 0.31 +0.3
3,868,647 + mrdA LU632_RS20335 0.32 +0.4
3,868,709 + mrdA LU632_RS20335 0.35 +0.9
3,868,709 + mrdA LU632_RS20335 0.35 +1.7
3,868,710 - mrdA LU632_RS20335 0.35 +0.9
3,868,710 - mrdA LU632_RS20335 0.35 +0.1

Or see this region's nucleotide sequence