Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS17425 and LU632_RS17430 are separated by 67 nucleotides LU632_RS17430 and LU632_RS17435 are separated by 91 nucleotides LU632_RS17435 and LU632_RS17440 are separated by 153 nucleotides LU632_RS17440 and LU632_RS17445 are separated by 103 nucleotides LU632_RS17445 and LU632_RS17450 are separated by 8 nucleotides
LU632_RS17425: LU632_RS17425 - CyaA/EF/ExoY family adenylyl cyclase toxin, at 3,275,100 to 3,281,711
_RS17425
LU632_RS17430: LU632_RS17430 - recombinase family protein, at 3,281,779 to 3,282,420
_RS17430
LU632_RS17435: LU632_RS17435 - DUF2913 family protein, at 3,282,512 to 3,282,799
_RS17435
LU632_RS17440: LU632_RS17440 - phospholipase D family protein, at 3,282,953 to 3,283,426
_RS17440
LU632_RS17445: LU632_RS17445 - hypothetical protein, at 3,283,530 to 3,283,708
_RS17445
LU632_RS17450: LU632_RS17450 - IS91 family transposase, at 3,283,717 to 3,284,916
_RS17450
Position (kb) 3282
3283 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3281.793 kb on + strand at 3281.794 kb on - strand at 3281.801 kb on + strand at 3281.802 kb on - strand at 3281.888 kb on + strand, within LU632_RS17430 at 3281.888 kb on + strand, within LU632_RS17430 at 3281.888 kb on + strand, within LU632_RS17430 at 3281.889 kb on - strand, within LU632_RS17430 at 3282.003 kb on + strand, within LU632_RS17430 at 3282.232 kb on - strand, within LU632_RS17430 at 3282.257 kb on - strand, within LU632_RS17430 at 3282.312 kb on - strand, within LU632_RS17430 at 3282.443 kb on + strand at 3282.444 kb on - strand at 3282.444 kb on - strand at 3282.444 kb on - strand at 3282.481 kb on + strand at 3282.514 kb on - strand at 3282.580 kb on + strand, within LU632_RS17435 at 3282.583 kb on + strand, within LU632_RS17435 at 3282.584 kb on - strand, within LU632_RS17435 at 3282.669 kb on - strand, within LU632_RS17435 at 3282.669 kb on - strand, within LU632_RS17435 at 3282.669 kb on - strand, within LU632_RS17435 at 3282.669 kb on - strand, within LU632_RS17435 at 3282.669 kb on - strand, within LU632_RS17435 at 3282.821 kb on - strand at 3282.825 kb on + strand at 3282.826 kb on - strand at 3282.950 kb on - strand at 3283.109 kb on - strand, within LU632_RS17440
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 3,281,793 + +1.2 3,281,794 - +1.0 3,281,801 + -0.3 3,281,802 - +0.4 3,281,888 + LU632_RS17430 0.17 +0.3 3,281,888 + LU632_RS17430 0.17 -0.4 3,281,888 + LU632_RS17430 0.17 -1.0 3,281,889 - LU632_RS17430 0.17 +0.9 3,282,003 + LU632_RS17430 0.35 -0.4 3,282,232 - LU632_RS17430 0.71 -0.4 3,282,257 - LU632_RS17430 0.74 +0.4 3,282,312 - LU632_RS17430 0.83 +0.1 3,282,443 + -0.2 3,282,444 - +0.1 3,282,444 - +0.1 3,282,444 - -0.1 3,282,481 + +0.1 3,282,514 - +2.0 3,282,580 + LU632_RS17435 0.24 -2.7 3,282,583 + LU632_RS17435 0.25 -0.2 3,282,584 - LU632_RS17435 0.25 -0.4 3,282,669 - LU632_RS17435 0.55 +0.6 3,282,669 - LU632_RS17435 0.55 -2.4 3,282,669 - LU632_RS17435 0.55 -0.4 3,282,669 - LU632_RS17435 0.55 -0.1 3,282,669 - LU632_RS17435 0.55 -0.6 3,282,821 - -3.0 3,282,825 + -1.8 3,282,826 - -0.0 3,282,950 - -0.6 3,283,109 - LU632_RS17440 0.33 +0.7
Or see this region's nucleotide sequence