Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17145

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS17130 and LU632_RS17135 are separated by 4 nucleotidesLU632_RS17135 and LU632_RS17140 overlap by 4 nucleotidesLU632_RS17140 and LU632_RS17145 overlap by 11 nucleotidesLU632_RS17145 and LU632_RS17150 are separated by 2 nucleotides LU632_RS17130: LU632_RS17130 - DUF2635 domain-containing protein, at 3,225,918 to 3,226,082 _RS17130 LU632_RS17135: LU632_RS17135 - ATP-binding protein, at 3,226,087 to 3,226,629 _RS17135 LU632_RS17140: LU632_RS17140 - hypothetical protein, at 3,226,626 to 3,226,964 _RS17140 LU632_RS17145: LU632_RS17145 - hypothetical protein, at 3,226,954 to 3,227,298 _RS17145 LU632_RS17150: LU632_RS17150 - major capsid protein, at 3,227,301 to 3,228,347 _RS17150 Position (kb) 3226 3227 3228Strain fitness (log2 ratio) -2 -1 0 1at 3225.989 kb on + strand, within LU632_RS17130at 3226.095 kb on + strandat 3226.108 kb on + strandat 3226.150 kb on - strand, within LU632_RS17135at 3226.227 kb on - strand, within LU632_RS17135at 3226.227 kb on - strand, within LU632_RS17135at 3226.230 kb on + strand, within LU632_RS17135at 3226.230 kb on + strand, within LU632_RS17135at 3226.231 kb on - strand, within LU632_RS17135at 3226.231 kb on - strand, within LU632_RS17135at 3226.231 kb on - strand, within LU632_RS17135at 3226.231 kb on - strand, within LU632_RS17135at 3226.319 kb on + strand, within LU632_RS17135at 3226.320 kb on - strand, within LU632_RS17135at 3226.320 kb on - strand, within LU632_RS17135at 3226.355 kb on - strand, within LU632_RS17135at 3226.556 kb on + strand, within LU632_RS17135at 3226.556 kb on + strand, within LU632_RS17135at 3226.557 kb on - strand, within LU632_RS17135at 3226.700 kb on - strand, within LU632_RS17140at 3226.700 kb on - strand, within LU632_RS17140at 3226.700 kb on - strand, within LU632_RS17140at 3226.700 kb on - strand, within LU632_RS17140at 3226.839 kb on - strand, within LU632_RS17140at 3226.863 kb on - strand, within LU632_RS17140at 3227.094 kb on + strand, within LU632_RS17145at 3227.094 kb on + strand, within LU632_RS17145at 3227.188 kb on + strand, within LU632_RS17145at 3227.189 kb on - strand, within LU632_RS17145at 3227.189 kb on - strand, within LU632_RS17145at 3227.206 kb on - strand, within LU632_RS17145at 3227.431 kb on + strand, within LU632_RS17150at 3227.432 kb on - strand, within LU632_RS17150at 3227.435 kb on + strand, within LU632_RS17150at 3227.462 kb on - strand, within LU632_RS17150at 3227.505 kb on - strand, within LU632_RS17150at 3227.564 kb on - strand, within LU632_RS17150at 3227.564 kb on - strand, within LU632_RS17150at 3227.720 kb on + strand, within LU632_RS17150at 3227.721 kb on - strand, within LU632_RS17150at 3227.843 kb on + strand, within LU632_RS17150at 3227.844 kb on - strand, within LU632_RS17150at 3228.018 kb on - strand, within LU632_RS17150at 3228.044 kb on - strand, within LU632_RS17150at 3228.108 kb on - strand, within LU632_RS17150at 3228.108 kb on - strand, within LU632_RS17150at 3228.118 kb on + strand, within LU632_RS17150at 3228.118 kb on + strand, within LU632_RS17150at 3228.119 kb on - strand, within LU632_RS17150at 3228.268 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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3,225,989 + LU632_RS17130 0.43 +1.2
3,226,095 + +0.9
3,226,108 + -0.3
3,226,150 - LU632_RS17135 0.12 +0.2
3,226,227 - LU632_RS17135 0.26 -0.3
3,226,227 - LU632_RS17135 0.26 +0.2
3,226,230 + LU632_RS17135 0.26 +0.7
3,226,230 + LU632_RS17135 0.26 -0.3
3,226,231 - LU632_RS17135 0.27 -0.3
3,226,231 - LU632_RS17135 0.27 +0.2
3,226,231 - LU632_RS17135 0.27 +0.5
3,226,231 - LU632_RS17135 0.27 -0.1
3,226,319 + LU632_RS17135 0.43 -2.7
3,226,320 - LU632_RS17135 0.43 +1.1
3,226,320 - LU632_RS17135 0.43 -0.3
3,226,355 - LU632_RS17135 0.49 -0.3
3,226,556 + LU632_RS17135 0.86 -1.7
3,226,556 + LU632_RS17135 0.86 -0.3
3,226,557 - LU632_RS17135 0.87 -1.6
3,226,700 - LU632_RS17140 0.22 +0.5
3,226,700 - LU632_RS17140 0.22 -2.3
3,226,700 - LU632_RS17140 0.22 +1.2
3,226,700 - LU632_RS17140 0.22 +1.7
3,226,839 - LU632_RS17140 0.63 -1.1
3,226,863 - LU632_RS17140 0.70 +0.7
3,227,094 + LU632_RS17145 0.41 +0.1
3,227,094 + LU632_RS17145 0.41 -0.9
3,227,188 + LU632_RS17145 0.68 -0.5
3,227,189 - LU632_RS17145 0.68 -0.6
3,227,189 - LU632_RS17145 0.68 +0.1
3,227,206 - LU632_RS17145 0.73 -0.9
3,227,431 + LU632_RS17150 0.12 -0.3
3,227,432 - LU632_RS17150 0.13 -0.9
3,227,435 + LU632_RS17150 0.13 +0.7
3,227,462 - LU632_RS17150 0.15 +0.9
3,227,505 - LU632_RS17150 0.19 -0.8
3,227,564 - LU632_RS17150 0.25 -1.4
3,227,564 - LU632_RS17150 0.25 -1.7
3,227,720 + LU632_RS17150 0.40 +0.5
3,227,721 - LU632_RS17150 0.40 -1.9
3,227,843 + LU632_RS17150 0.52 +0.3
3,227,844 - LU632_RS17150 0.52 -0.4
3,228,018 - LU632_RS17150 0.68 -0.6
3,228,044 - LU632_RS17150 0.71 -0.4
3,228,108 - LU632_RS17150 0.77 -0.4
3,228,108 - LU632_RS17150 0.77 -0.4
3,228,118 + LU632_RS17150 0.78 -0.4
3,228,118 + LU632_RS17150 0.78 -0.7
3,228,119 - LU632_RS17150 0.78 +0.6
3,228,268 + +0.5

Or see this region's nucleotide sequence