Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15480

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS15470 and LU632_RS15475 overlap by 4 nucleotidesLU632_RS15475 and LU632_RS15480 overlap by 4 nucleotidesLU632_RS15480 and LU632_RS15485 overlap by 4 nucleotides LU632_RS15470: LU632_RS15470 - hypothetical protein, at 2,934,176 to 2,935,849 _RS15470 LU632_RS15475: LU632_RS15475 - hypothetical protein, at 2,935,846 to 2,936,388 _RS15475 LU632_RS15480: LU632_RS15480 - hypothetical protein, at 2,936,385 to 2,937,089 _RS15480 LU632_RS15485: LU632_RS15485 - phage tail protein, at 2,937,086 to 2,938,564 _RS15485 Position (kb) 2936 2937 2938Strain fitness (log2 ratio) -2 -1 0 1at 2935.395 kb on + strand, within LU632_RS15470at 2935.452 kb on + strand, within LU632_RS15470at 2935.485 kb on + strand, within LU632_RS15470at 2935.686 kb on - strandat 2935.834 kb on + strandat 2935.849 kb on + strandat 2935.849 kb on + strandat 2935.849 kb on + strandat 2935.849 kb on + strandat 2935.850 kb on - strandat 2935.913 kb on - strand, within LU632_RS15475at 2936.015 kb on + strand, within LU632_RS15475at 2936.016 kb on - strand, within LU632_RS15475at 2936.106 kb on + strand, within LU632_RS15475at 2936.376 kb on + strandat 2936.805 kb on + strand, within LU632_RS15480at 2936.806 kb on - strand, within LU632_RS15480at 2936.893 kb on - strand, within LU632_RS15480at 2936.971 kb on + strand, within LU632_RS15480at 2937.230 kb on - strandat 2937.238 kb on + strand, within LU632_RS15485at 2937.242 kb on - strand, within LU632_RS15485at 2937.280 kb on + strand, within LU632_RS15485at 2937.603 kb on + strand, within LU632_RS15485at 2937.603 kb on + strand, within LU632_RS15485at 2937.604 kb on - strand, within LU632_RS15485at 2937.604 kb on - strand, within LU632_RS15485at 2937.604 kb on - strand, within LU632_RS15485at 2937.604 kb on - strand, within LU632_RS15485at 2937.605 kb on + strand, within LU632_RS15485at 2937.606 kb on - strand, within LU632_RS15485at 2937.606 kb on - strand, within LU632_RS15485at 2937.606 kb on - strand, within LU632_RS15485at 2937.606 kb on - strand, within LU632_RS15485at 2937.828 kb on + strand, within LU632_RS15485at 2937.828 kb on + strand, within LU632_RS15485at 2937.829 kb on - strand, within LU632_RS15485at 2937.859 kb on + strand, within LU632_RS15485at 2937.904 kb on + strand, within LU632_RS15485at 2937.998 kb on - strand, within LU632_RS15485at 2938.065 kb on + strand, within LU632_RS15485at 2938.065 kb on + strand, within LU632_RS15485at 2938.065 kb on + strand, within LU632_RS15485at 2938.065 kb on + strand, within LU632_RS15485at 2938.066 kb on - strand, within LU632_RS15485

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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2,935,395 + LU632_RS15470 0.73 -0.3
2,935,452 + LU632_RS15470 0.76 +0.4
2,935,485 + LU632_RS15470 0.78 +1.0
2,935,686 - -0.4
2,935,834 + +0.4
2,935,849 + -1.9
2,935,849 + -0.3
2,935,849 + +0.5
2,935,849 + -0.9
2,935,850 - +1.2
2,935,913 - LU632_RS15475 0.12 +0.9
2,936,015 + LU632_RS15475 0.31 +0.2
2,936,016 - LU632_RS15475 0.31 -0.1
2,936,106 + LU632_RS15475 0.48 +1.3
2,936,376 + -0.0
2,936,805 + LU632_RS15480 0.60 -0.9
2,936,806 - LU632_RS15480 0.60 -1.1
2,936,893 - LU632_RS15480 0.72 -0.6
2,936,971 + LU632_RS15480 0.83 -0.5
2,937,230 - -0.3
2,937,238 + LU632_RS15485 0.10 +1.3
2,937,242 - LU632_RS15485 0.11 -1.3
2,937,280 + LU632_RS15485 0.13 +0.0
2,937,603 + LU632_RS15485 0.35 -1.1
2,937,603 + LU632_RS15485 0.35 -1.6
2,937,604 - LU632_RS15485 0.35 +0.7
2,937,604 - LU632_RS15485 0.35 +0.8
2,937,604 - LU632_RS15485 0.35 +0.0
2,937,604 - LU632_RS15485 0.35 +1.3
2,937,605 + LU632_RS15485 0.35 +0.1
2,937,606 - LU632_RS15485 0.35 -0.1
2,937,606 - LU632_RS15485 0.35 -1.3
2,937,606 - LU632_RS15485 0.35 +0.4
2,937,606 - LU632_RS15485 0.35 -0.3
2,937,828 + LU632_RS15485 0.50 -1.5
2,937,828 + LU632_RS15485 0.50 -0.0
2,937,829 - LU632_RS15485 0.50 +0.7
2,937,859 + LU632_RS15485 0.52 +0.7
2,937,904 + LU632_RS15485 0.55 +0.2
2,937,998 - LU632_RS15485 0.62 -0.3
2,938,065 + LU632_RS15485 0.66 -1.3
2,938,065 + LU632_RS15485 0.66 +0.3
2,938,065 + LU632_RS15485 0.66 -0.7
2,938,065 + LU632_RS15485 0.66 +0.3
2,938,066 - LU632_RS15485 0.66 +0.1

Or see this region's nucleotide sequence