Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05130 and LU632_RS05135 overlap by 4 nucleotides LU632_RS05135 and LU632_RS05140 overlap by 1 nucleotides LU632_RS05140 and LU632_RS05145 overlap by 11 nucleotides
LU632_RS05130: LU632_RS05130 - TIGR03750 family conjugal transfer protein, at 995,144 to 995,500
_RS05130
LU632_RS05135: LU632_RS05135 - TIGR03746 family integrating conjugative element protein, at 995,497 to 996,168
_RS05135
LU632_RS05140: LU632_RS05140 - TIGR03749 family integrating conjugative element protein, at 996,168 to 997,091
_RS05140
LU632_RS05145: LU632_RS05145 - TIGR03752 family integrating conjugative element protein, at 997,081 to 998,565
_RS05145
Position (kb) 996
997
998 Strain fitness (log2 ratio) -2
-1
0
1 at 995.464 kb on + strand, within LU632_RS05130 at 995.497 kb on - strand at 995.633 kb on - strand, within LU632_RS05135 at 995.636 kb on - strand, within LU632_RS05135 at 995.698 kb on + strand, within LU632_RS05135 at 995.698 kb on + strand, within LU632_RS05135 at 995.714 kb on - strand, within LU632_RS05135 at 995.714 kb on - strand, within LU632_RS05135 at 995.761 kb on + strand, within LU632_RS05135 at 995.914 kb on + strand, within LU632_RS05135 at 995.915 kb on - strand, within LU632_RS05135 at 995.934 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.987 kb on - strand, within LU632_RS05135 at 995.987 kb on - strand, within LU632_RS05135 at 996.183 kb on + strand at 996.183 kb on + strand at 996.183 kb on + strand at 996.184 kb on - strand at 996.402 kb on + strand, within LU632_RS05140 at 996.402 kb on + strand, within LU632_RS05140 at 996.402 kb on + strand, within LU632_RS05140 at 996.564 kb on - strand, within LU632_RS05140 at 996.564 kb on - strand, within LU632_RS05140 at 996.723 kb on + strand, within LU632_RS05140 at 997.089 kb on + strand at 997.089 kb on + strand at 997.114 kb on - strand at 997.287 kb on + strand, within LU632_RS05145 at 997.771 kb on - strand, within LU632_RS05145 at 997.811 kb on - strand, within LU632_RS05145 at 997.812 kb on + strand, within LU632_RS05145 at 997.923 kb on - strand, within LU632_RS05145
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 995,464 + LU632_RS05130 0.90 -0.2 995,497 - -0.7 995,633 - LU632_RS05135 0.20 -0.3 995,636 - LU632_RS05135 0.21 +0.0 995,698 + LU632_RS05135 0.30 +0.9 995,698 + LU632_RS05135 0.30 -0.3 995,714 - LU632_RS05135 0.32 +0.5 995,714 - LU632_RS05135 0.32 +0.7 995,761 + LU632_RS05135 0.39 +0.6 995,914 + LU632_RS05135 0.62 +0.6 995,915 - LU632_RS05135 0.62 -0.6 995,934 + LU632_RS05135 0.65 +0.7 995,986 + LU632_RS05135 0.73 -0.6 995,986 + LU632_RS05135 0.73 -0.3 995,986 + LU632_RS05135 0.73 -1.9 995,987 - LU632_RS05135 0.73 +0.9 995,987 - LU632_RS05135 0.73 -1.3 996,183 + +1.7 996,183 + -0.3 996,183 + -0.2 996,184 - +1.3 996,402 + LU632_RS05140 0.25 -1.7 996,402 + LU632_RS05140 0.25 +0.3 996,402 + LU632_RS05140 0.25 -1.3 996,564 - LU632_RS05140 0.43 -0.5 996,564 - LU632_RS05140 0.43 +0.7 996,723 + LU632_RS05140 0.60 -0.9 997,089 + -0.0 997,089 + +0.6 997,114 - -0.1 997,287 + LU632_RS05145 0.14 -1.3 997,771 - LU632_RS05145 0.46 +0.2 997,811 - LU632_RS05145 0.49 -1.9 997,812 + LU632_RS05145 0.49 +0.1 997,923 - LU632_RS05145 0.57 +0.0
Or see this region's nucleotide sequence