Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04050 and LU632_RS04055 are separated by 72 nucleotides LU632_RS04055 and tnpA are separated by 113 nucleotides tnpA and LU632_RS04065 are separated by 81 nucleotides LU632_RS04065 and LU632_RS04070 are separated by 20 nucleotides LU632_RS04070 and LU632_RS04075 are separated by 222 nucleotides
LU632_RS04050: LU632_RS04050 - IS3 family transposase, at 808,733 to 809,896
_RS04050
LU632_RS04055: LU632_RS04055 - GntR family transcriptional regulator, at 809,969 to 810,166
_RS04055
LU632_RS04060: tnpA - IS200/IS605 family transposase, at 810,280 to 810,720
tnpA
LU632_RS04065: LU632_RS04065 - AlpA family phage regulatory protein, at 810,802 to 811,080
_RS04065
LU632_RS04070: LU632_RS04070 - Rha family transcriptional regulator, at 811,101 to 811,700
_RS04070
LU632_RS04075: LU632_RS04075 - IS481 family transposase, at 811,923 to 812,962
_RS04075
Position (kb) 810
811
812 Strain fitness (log2 ratio) -1
0
1 at 810.025 kb on + strand, within LU632_RS04055 at 810.026 kb on - strand, within LU632_RS04055 at 810.035 kb on - strand, within LU632_RS04055 at 810.117 kb on - strand, within LU632_RS04055 at 810.813 kb on + strand at 810.822 kb on + strand at 810.859 kb on - strand, within LU632_RS04065 at 810.880 kb on - strand, within LU632_RS04065 at 810.981 kb on + strand, within LU632_RS04065 at 811.083 kb on - strand at 811.092 kb on + strand at 811.093 kb on - strand at 811.111 kb on + strand at 811.207 kb on + strand, within LU632_RS04070 at 811.208 kb on - strand, within LU632_RS04070 at 811.353 kb on + strand, within LU632_RS04070 at 811.353 kb on + strand, within LU632_RS04070 at 811.353 kb on + strand, within LU632_RS04070 at 811.353 kb on + strand, within LU632_RS04070 at 811.354 kb on - strand, within LU632_RS04070 at 811.354 kb on - strand, within LU632_RS04070 at 811.354 kb on - strand, within LU632_RS04070 at 811.354 kb on - strand, within LU632_RS04070 at 811.354 kb on - strand, within LU632_RS04070 at 811.355 kb on + strand, within LU632_RS04070 at 811.355 kb on + strand, within LU632_RS04070 at 811.357 kb on + strand, within LU632_RS04070 at 811.357 kb on + strand, within LU632_RS04070 at 811.357 kb on + strand, within LU632_RS04070 at 811.358 kb on - strand, within LU632_RS04070 at 811.435 kb on - strand, within LU632_RS04070 at 811.435 kb on - strand, within LU632_RS04070 at 811.440 kb on + strand, within LU632_RS04070 at 811.460 kb on - strand, within LU632_RS04070 at 811.460 kb on - strand, within LU632_RS04070 at 811.460 kb on - strand, within LU632_RS04070 at 811.460 kb on - strand, within LU632_RS04070 at 811.461 kb on + strand, within LU632_RS04070 at 811.461 kb on + strand, within LU632_RS04070 at 811.467 kb on + strand, within LU632_RS04070 at 811.467 kb on + strand, within LU632_RS04070 at 811.468 kb on - strand, within LU632_RS04070 at 811.468 kb on - strand, within LU632_RS04070 at 811.532 kb on + strand, within LU632_RS04070 at 811.636 kb on - strand, within LU632_RS04070 at 811.683 kb on - strand at 811.694 kb on + strand at 811.695 kb on - strand at 811.698 kb on + strand at 811.753 kb on + strand at 811.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 810,025 + LU632_RS04055 0.28 +0.3 810,026 - LU632_RS04055 0.29 -0.3 810,035 - LU632_RS04055 0.33 +0.7 810,117 - LU632_RS04055 0.75 +0.6 810,813 + -0.1 810,822 + -0.4 810,859 - LU632_RS04065 0.20 -0.0 810,880 - LU632_RS04065 0.28 +0.0 810,981 + LU632_RS04065 0.64 -1.6 811,083 - -0.3 811,092 + -0.2 811,093 - +1.4 811,111 + -0.3 811,207 + LU632_RS04070 0.18 -1.2 811,208 - LU632_RS04070 0.18 +1.0 811,353 + LU632_RS04070 0.42 -0.0 811,353 + LU632_RS04070 0.42 -0.9 811,353 + LU632_RS04070 0.42 -0.9 811,353 + LU632_RS04070 0.42 -0.3 811,354 - LU632_RS04070 0.42 -0.8 811,354 - LU632_RS04070 0.42 +0.3 811,354 - LU632_RS04070 0.42 -0.7 811,354 - LU632_RS04070 0.42 -0.9 811,354 - LU632_RS04070 0.42 +0.3 811,355 + LU632_RS04070 0.42 +0.3 811,355 + LU632_RS04070 0.42 -0.3 811,357 + LU632_RS04070 0.43 -0.3 811,357 + LU632_RS04070 0.43 -1.2 811,357 + LU632_RS04070 0.43 -0.7 811,358 - LU632_RS04070 0.43 +0.8 811,435 - LU632_RS04070 0.56 +0.5 811,435 - LU632_RS04070 0.56 +0.3 811,440 + LU632_RS04070 0.56 -0.1 811,460 - LU632_RS04070 0.60 +0.7 811,460 - LU632_RS04070 0.60 -0.1 811,460 - LU632_RS04070 0.60 +0.9 811,460 - LU632_RS04070 0.60 -0.3 811,461 + LU632_RS04070 0.60 -0.3 811,461 + LU632_RS04070 0.60 -0.9 811,467 + LU632_RS04070 0.61 -0.7 811,467 + LU632_RS04070 0.61 -1.3 811,468 - LU632_RS04070 0.61 -0.2 811,468 - LU632_RS04070 0.61 +0.9 811,532 + LU632_RS04070 0.72 +0.5 811,636 - LU632_RS04070 0.89 +1.3 811,683 - +0.3 811,694 + +0.3 811,695 - +0.5 811,698 + -0.3 811,753 + -0.0 811,892 + +1.0
Or see this region's nucleotide sequence