Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03440 and LU632_RS03445 are separated by 18 nucleotides LU632_RS03445 and LU632_RS03450 are separated by 103 nucleotides LU632_RS03450 and LU632_RS03455 are separated by 38 nucleotides LU632_RS03455 and LU632_RS03460 are separated by 46 nucleotides
LU632_RS03440: LU632_RS03440 - single-stranded DNA-binding protein, at 703,393 to 703,836
_RS03440
LU632_RS03445: LU632_RS03445 - ProQ/FinO family protein, at 703,855 to 704,322
_RS03445
LU632_RS03450: LU632_RS03450 - hypothetical protein, at 704,426 to 705,979
_RS03450
LU632_RS03455: LU632_RS03455 - hypothetical protein, at 706,018 to 706,497
_RS03455
LU632_RS03460: LU632_RS03460 - IS91 family transposase, at 706,544 to 707,767
_RS03460
Position (kb) 704
705
706 Strain fitness (log2 ratio) -2
-1
0
1
2 at 703.491 kb on - strand, within LU632_RS03440 at 703.506 kb on + strand, within LU632_RS03440 at 703.653 kb on + strand, within LU632_RS03440 at 703.654 kb on - strand, within LU632_RS03440 at 703.819 kb on + strand at 703.820 kb on - strand at 703.822 kb on + strand at 703.823 kb on - strand at 703.823 kb on - strand at 703.975 kb on - strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.046 kb on - strand, within LU632_RS03445 at 704.046 kb on - strand, within LU632_RS03445 at 704.084 kb on + strand, within LU632_RS03445 at 704.084 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.102 kb on - strand, within LU632_RS03445 at 704.144 kb on - strand, within LU632_RS03445 at 704.176 kb on + strand, within LU632_RS03445 at 704.183 kb on + strand, within LU632_RS03445 at 704.183 kb on + strand, within LU632_RS03445 at 704.447 kb on + strand at 704.448 kb on - strand at 704.522 kb on - strand at 704.562 kb on + strand at 704.566 kb on + strand at 704.640 kb on + strand, within LU632_RS03450 at 704.641 kb on - strand, within LU632_RS03450 at 704.641 kb on - strand, within LU632_RS03450 at 704.857 kb on + strand, within LU632_RS03450 at 704.858 kb on - strand, within LU632_RS03450 at 704.858 kb on - strand, within LU632_RS03450 at 704.953 kb on + strand, within LU632_RS03450 at 705.184 kb on - strand, within LU632_RS03450 at 705.399 kb on + strand, within LU632_RS03450 at 705.399 kb on + strand, within LU632_RS03450 at 705.400 kb on - strand, within LU632_RS03450 at 705.517 kb on + strand, within LU632_RS03450 at 705.684 kb on + strand, within LU632_RS03450 at 705.684 kb on + strand, within LU632_RS03450 at 705.685 kb on - strand, within LU632_RS03450 at 705.721 kb on - strand, within LU632_RS03450 at 705.730 kb on - strand, within LU632_RS03450 at 705.732 kb on + strand, within LU632_RS03450 at 705.748 kb on + strand, within LU632_RS03450 at 705.748 kb on + strand, within LU632_RS03450 at 705.874 kb on + strand at 705.874 kb on + strand at 705.911 kb on - strand at 705.911 kb on - strand at 705.912 kb on + strand at 705.912 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.947 kb on - strand at 705.947 kb on - strand at 705.947 kb on - strand at 705.985 kb on + strand at 705.986 kb on - strand at 705.989 kb on - strand at 706.012 kb on - strand at 706.076 kb on - strand, within LU632_RS03455 at 706.076 kb on - strand, within LU632_RS03455 at 706.100 kb on + strand, within LU632_RS03455 at 706.101 kb on - strand, within LU632_RS03455 at 706.116 kb on + strand, within LU632_RS03455 at 706.163 kb on - strand, within LU632_RS03455 at 706.167 kb on + strand, within LU632_RS03455 at 706.177 kb on - strand, within LU632_RS03455 at 706.221 kb on + strand, within LU632_RS03455 at 706.323 kb on - strand, within LU632_RS03455 at 706.351 kb on + strand, within LU632_RS03455 at 706.351 kb on + strand, within LU632_RS03455
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 703,491 - LU632_RS03440 0.22 -0.6 703,506 + LU632_RS03440 0.25 +0.3 703,653 + LU632_RS03440 0.59 +1.1 703,654 - LU632_RS03440 0.59 +0.7 703,819 + -0.2 703,820 - -1.3 703,822 + -0.1 703,823 - -0.7 703,823 - -0.3 703,975 - LU632_RS03445 0.26 +0.1 704,045 + LU632_RS03445 0.41 -0.4 704,045 + LU632_RS03445 0.41 +0.1 704,045 + LU632_RS03445 0.41 -1.3 704,046 - LU632_RS03445 0.41 -0.5 704,046 - LU632_RS03445 0.41 -0.7 704,084 + LU632_RS03445 0.49 -1.3 704,084 + LU632_RS03445 0.49 +0.3 704,101 + LU632_RS03445 0.53 +0.0 704,101 + LU632_RS03445 0.53 +1.7 704,101 + LU632_RS03445 0.53 -0.1 704,101 + LU632_RS03445 0.53 +0.4 704,102 - LU632_RS03445 0.53 +0.6 704,144 - LU632_RS03445 0.62 +0.5 704,176 + LU632_RS03445 0.69 -0.3 704,183 + LU632_RS03445 0.70 +0.8 704,183 + LU632_RS03445 0.70 -0.3 704,447 + +0.4 704,448 - +0.6 704,522 - -0.3 704,562 + -0.5 704,566 + -0.3 704,640 + LU632_RS03450 0.14 +0.1 704,641 - LU632_RS03450 0.14 +0.3 704,641 - LU632_RS03450 0.14 +0.7 704,857 + LU632_RS03450 0.28 +0.3 704,858 - LU632_RS03450 0.28 -0.5 704,858 - LU632_RS03450 0.28 +0.1 704,953 + LU632_RS03450 0.34 -0.3 705,184 - LU632_RS03450 0.49 +0.9 705,399 + LU632_RS03450 0.63 +2.0 705,399 + LU632_RS03450 0.63 +0.8 705,400 - LU632_RS03450 0.63 +0.0 705,517 + LU632_RS03450 0.70 -0.0 705,684 + LU632_RS03450 0.81 +1.5 705,684 + LU632_RS03450 0.81 +1.1 705,685 - LU632_RS03450 0.81 +1.0 705,721 - LU632_RS03450 0.83 +0.3 705,730 - LU632_RS03450 0.84 -0.6 705,732 + LU632_RS03450 0.84 +0.7 705,748 + LU632_RS03450 0.85 -1.9 705,748 + LU632_RS03450 0.85 -0.3 705,874 + +0.9 705,874 + +1.3 705,911 - +0.3 705,911 - +1.7 705,912 + +2.3 705,912 + +0.9 705,946 + +0.2 705,946 + -1.1 705,946 + +0.0 705,946 + -0.3 705,946 + +0.1 705,947 - -0.3 705,947 - +0.1 705,947 - -0.2 705,985 + +0.9 705,986 - +1.3 705,989 - +1.2 706,012 - +0.1 706,076 - LU632_RS03455 0.12 -0.1 706,076 - LU632_RS03455 0.12 -0.0 706,100 + LU632_RS03455 0.17 -0.7 706,101 - LU632_RS03455 0.17 -0.2 706,116 + LU632_RS03455 0.20 -0.9 706,163 - LU632_RS03455 0.30 -0.3 706,167 + LU632_RS03455 0.31 -0.1 706,177 - LU632_RS03455 0.33 -2.7 706,221 + LU632_RS03455 0.42 +0.8 706,323 - LU632_RS03455 0.64 +0.4 706,351 + LU632_RS03455 0.69 +0.3 706,351 + LU632_RS03455 0.69 +2.0
Or see this region's nucleotide sequence