Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cra and mraZ are separated by 537 nucleotides mraZ and rsmH are separated by 2 nucleotides rsmH and ftsL overlap by 4 nucleotides ftsL and LU632_RS02920 are separated by 8 nucleotides
LU632_RS02900: cra - catabolite repressor/activator, at 591,163 to 592,173
cra
LU632_RS02905: mraZ - division/cell wall cluster transcriptional repressor MraZ, at 592,711 to 593,169
mraZ
LU632_RS02910: rsmH - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 593,172 to 594,113
rsmH
LU632_RS02915: ftsL - cell division protein FtsL, at 594,110 to 594,430
ftsL
LU632_RS02920: LU632_RS02920 - peptidoglycan glycosyltransferase FtsI, at 594,439 to 596,211
_RS02920
Position (kb) 593
594
595 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 592.231 kb on + strand at 592.231 kb on + strand at 592.231 kb on + strand at 592.231 kb on + strand at 592.234 kb on - strand at 592.234 kb on - strand at 592.405 kb on - strand at 592.408 kb on - strand at 592.414 kb on + strand at 592.415 kb on - strand at 592.468 kb on + strand at 592.475 kb on - strand at 592.476 kb on + strand at 592.618 kb on - strand at 592.618 kb on - strand at 592.645 kb on + strand at 592.818 kb on + strand, within mraZ at 592.875 kb on + strand, within mraZ at 593.086 kb on + strand, within mraZ at 593.167 kb on + strand at 593.167 kb on + strand at 593.167 kb on + strand at 593.171 kb on + strand at 593.171 kb on + strand at 593.171 kb on + strand at 593.171 kb on + strand at 593.192 kb on + strand at 593.192 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.387 kb on + strand, within rsmH at 593.393 kb on + strand, within rsmH at 593.393 kb on + strand, within rsmH at 593.612 kb on + strand, within rsmH at 593.627 kb on + strand, within rsmH at 593.660 kb on + strand, within rsmH at 593.660 kb on + strand, within rsmH at 593.660 kb on + strand, within rsmH at 593.798 kb on + strand, within rsmH at 593.798 kb on + strand, within rsmH at 593.827 kb on + strand, within rsmH at 593.878 kb on + strand, within rsmH at 593.927 kb on + strand, within rsmH at 593.989 kb on + strand, within rsmH at 593.989 kb on + strand, within rsmH at 593.989 kb on + strand, within rsmH at 594.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 592,231 + +0.8 592,231 + -0.8 592,231 + +0.2 592,231 + +0.3 592,234 - -0.3 592,234 - -2.5 592,405 - -1.7 592,408 - +1.8 592,414 + +0.5 592,415 - -0.6 592,468 + -0.6 592,475 - +0.6 592,476 + -0.1 592,618 - +0.7 592,618 - +0.5 592,645 + -0.7 592,818 + mraZ LU632_RS02905 0.23 +2.0 592,875 + mraZ LU632_RS02905 0.36 +0.1 593,086 + mraZ LU632_RS02905 0.82 +1.0 593,167 + +0.6 593,167 + +0.4 593,167 + -0.3 593,171 + -0.3 593,171 + +0.6 593,171 + +0.1 593,171 + -0.2 593,192 + -0.9 593,192 + -0.5 593,250 + -0.7 593,250 + -1.6 593,250 + -0.3 593,250 + -4.3 593,250 + -1.6 593,250 + -0.7 593,250 + +0.7 593,250 + +0.0 593,387 + rsmH LU632_RS02910 0.23 -0.5 593,393 + rsmH LU632_RS02910 0.23 -1.9 593,393 + rsmH LU632_RS02910 0.23 -1.3 593,612 + rsmH LU632_RS02910 0.47 -0.3 593,627 + rsmH LU632_RS02910 0.48 -0.2 593,660 + rsmH LU632_RS02910 0.52 +0.2 593,660 + rsmH LU632_RS02910 0.52 -1.0 593,660 + rsmH LU632_RS02910 0.52 -0.3 593,798 + rsmH LU632_RS02910 0.66 -0.3 593,798 + rsmH LU632_RS02910 0.66 +0.7 593,827 + rsmH LU632_RS02910 0.70 -0.7 593,878 + rsmH LU632_RS02910 0.75 +0.7 593,927 + rsmH LU632_RS02910 0.80 -1.3 593,989 + rsmH LU632_RS02910 0.87 -2.5 593,989 + rsmH LU632_RS02910 0.87 -0.7 593,989 + rsmH LU632_RS02910 0.87 -0.3 594,414 + -0.6
Or see this region's nucleotide sequence