Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01425 and LU632_RS01430 overlap by 4 nucleotides LU632_RS01430 and LU632_RS01435 are separated by 84 nucleotides LU632_RS01435 and LU632_RS01440 are separated by 15 nucleotides
LU632_RS01425: LU632_RS01425 - conjugative transfer ATPase, at 292,862 to 295,673
_RS01425
LU632_RS01430: LU632_RS01430 - hypothetical protein, at 295,670 to 296,074
_RS01430
LU632_RS01435: LU632_RS01435 - hypothetical protein, at 296,159 to 296,578
_RS01435
LU632_RS01440: LU632_RS01440 - hypothetical protein, at 296,594 to 297,268
_RS01440
Position (kb) 295
296
297 Strain fitness (log2 ratio) -1
0
1
2 at 295.738 kb on + strand, within LU632_RS01430 at 295.738 kb on + strand, within LU632_RS01430 at 295.739 kb on - strand, within LU632_RS01430 at 296.581 kb on - strand at 296.614 kb on + strand at 296.614 kb on + strand at 296.614 kb on + strand at 296.615 kb on - strand at 296.615 kb on - strand at 296.654 kb on - strand at 296.654 kb on - strand at 296.655 kb on + strand at 296.671 kb on - strand, within LU632_RS01440 at 296.671 kb on - strand, within LU632_RS01440 at 296.671 kb on - strand, within LU632_RS01440 at 296.724 kb on + strand, within LU632_RS01440 at 296.729 kb on + strand, within LU632_RS01440 at 296.772 kb on + strand, within LU632_RS01440 at 296.793 kb on - strand, within LU632_RS01440 at 296.795 kb on - strand, within LU632_RS01440 at 296.795 kb on - strand, within LU632_RS01440 at 296.806 kb on + strand, within LU632_RS01440 at 296.806 kb on + strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.808 kb on + strand, within LU632_RS01440 at 296.808 kb on + strand, within LU632_RS01440 at 296.809 kb on - strand, within LU632_RS01440 at 296.809 kb on - strand, within LU632_RS01440 at 296.809 kb on - strand, within LU632_RS01440 at 296.860 kb on + strand, within LU632_RS01440 at 296.898 kb on - strand, within LU632_RS01440 at 296.924 kb on + strand, within LU632_RS01440 at 296.924 kb on + strand, within LU632_RS01440 at 296.925 kb on - strand, within LU632_RS01440 at 296.925 kb on - strand, within LU632_RS01440 at 296.958 kb on - strand, within LU632_RS01440 at 297.014 kb on + strand, within LU632_RS01440 at 297.014 kb on + strand, within LU632_RS01440 at 297.014 kb on + strand, within LU632_RS01440 at 297.015 kb on - strand, within LU632_RS01440 at 297.015 kb on - strand, within LU632_RS01440
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 295,738 + LU632_RS01430 0.17 -0.9 295,738 + LU632_RS01430 0.17 +1.3 295,739 - LU632_RS01430 0.17 +2.5 296,581 - -0.3 296,614 + -0.3 296,614 + +0.7 296,614 + +1.0 296,615 - +0.2 296,615 - +1.3 296,654 - +0.3 296,654 - -0.1 296,655 + +0.5 296,671 - LU632_RS01440 0.11 +0.8 296,671 - LU632_RS01440 0.11 -1.3 296,671 - LU632_RS01440 0.11 +0.7 296,724 + LU632_RS01440 0.19 +1.7 296,729 + LU632_RS01440 0.20 -1.0 296,772 + LU632_RS01440 0.26 +0.2 296,793 - LU632_RS01440 0.29 -0.7 296,795 - LU632_RS01440 0.30 +1.2 296,795 - LU632_RS01440 0.30 -0.2 296,806 + LU632_RS01440 0.31 +0.2 296,806 + LU632_RS01440 0.31 -1.5 296,807 - LU632_RS01440 0.32 +0.7 296,807 - LU632_RS01440 0.32 -0.2 296,807 - LU632_RS01440 0.32 -0.4 296,807 - LU632_RS01440 0.32 -0.1 296,807 - LU632_RS01440 0.32 -0.3 296,807 - LU632_RS01440 0.32 -0.7 296,807 - LU632_RS01440 0.32 +1.0 296,808 + LU632_RS01440 0.32 +1.3 296,808 + LU632_RS01440 0.32 +1.1 296,809 - LU632_RS01440 0.32 -0.3 296,809 - LU632_RS01440 0.32 +0.1 296,809 - LU632_RS01440 0.32 -0.1 296,860 + LU632_RS01440 0.39 +1.3 296,898 - LU632_RS01440 0.45 -0.2 296,924 + LU632_RS01440 0.49 -1.3 296,924 + LU632_RS01440 0.49 +0.6 296,925 - LU632_RS01440 0.49 +1.6 296,925 - LU632_RS01440 0.49 +1.9 296,958 - LU632_RS01440 0.54 -0.7 297,014 + LU632_RS01440 0.62 +0.6 297,014 + LU632_RS01440 0.62 +0.4 297,014 + LU632_RS01440 0.62 +0.3 297,015 - LU632_RS01440 0.62 +1.4 297,015 - LU632_RS01440 0.62 +0.5
Or see this region's nucleotide sequence