Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26070 and LU632_RS26075 overlap by 23 nucleotides LU632_RS26075 and LU632_RS26080 are separated by 11 nucleotides LU632_RS26080 and LU632_RS26085 are separated by 257 nucleotides
LU632_RS26070: LU632_RS26070 - phage terminase large subunit, at 20,393 to 21,637
_RS26070
LU632_RS26075: LU632_RS26075 - hypothetical protein, at 21,615 to 22,499
_RS26075
LU632_RS26080: LU632_RS26080 - site-specific integrase, at 22,511 to 23,527
_RS26080
LU632_RS26085: LU632_RS26085 - site-specific DNA-methyltransferase, at 23,785 to 25,029
_RS26085
Position (kb) 22
23
24 Strain fitness (log2 ratio) -2
-1
0
1
2 at 21.539 kb on - strand at 21.559 kb on - strand at 21.611 kb on + strand at 21.612 kb on - strand at 21.612 kb on - strand at 21.657 kb on + strand at 21.658 kb on - strand at 21.658 kb on - strand at 21.658 kb on - strand at 21.658 kb on - strand at 21.658 kb on - strand at 21.658 kb on - strand at 21.662 kb on + strand at 21.662 kb on + strand at 21.662 kb on + strand at 21.662 kb on + strand at 21.663 kb on - strand at 21.663 kb on - strand at 21.666 kb on + strand at 21.666 kb on + strand at 21.666 kb on + strand at 21.666 kb on + strand at 21.666 kb on + strand at 21.666 kb on + strand at 21.892 kb on + strand, within LU632_RS26075 at 21.892 kb on + strand, within LU632_RS26075 at 21.893 kb on - strand, within LU632_RS26075 at 21.893 kb on - strand, within LU632_RS26075 at 21.897 kb on + strand, within LU632_RS26075 at 21.898 kb on - strand, within LU632_RS26075 at 21.898 kb on - strand, within LU632_RS26075 at 21.912 kb on - strand, within LU632_RS26075 at 21.933 kb on - strand, within LU632_RS26075 at 22.004 kb on + strand, within LU632_RS26075 at 22.005 kb on - strand, within LU632_RS26075 at 22.005 kb on - strand, within LU632_RS26075 at 22.005 kb on - strand, within LU632_RS26075 at 22.040 kb on + strand, within LU632_RS26075 at 22.116 kb on + strand, within LU632_RS26075 at 22.117 kb on - strand, within LU632_RS26075 at 22.206 kb on + strand, within LU632_RS26075 at 22.229 kb on + strand, within LU632_RS26075 at 22.230 kb on - strand, within LU632_RS26075 at 22.269 kb on + strand, within LU632_RS26075 at 22.479 kb on + strand at 22.480 kb on - strand at 22.500 kb on - strand at 22.512 kb on + strand at 22.512 kb on + strand at 22.512 kb on + strand at 22.512 kb on + strand at 22.512 kb on + strand at 22.513 kb on - strand at 22.515 kb on - strand at 22.563 kb on + strand at 22.564 kb on - strand at 22.566 kb on + strand at 22.566 kb on + strand at 22.566 kb on + strand at 22.567 kb on - strand at 22.567 kb on - strand at 22.580 kb on - strand at 22.675 kb on + strand, within LU632_RS26080 at 22.684 kb on + strand, within LU632_RS26080 at 22.684 kb on + strand, within LU632_RS26080 at 22.684 kb on + strand, within LU632_RS26080 at 22.701 kb on + strand, within LU632_RS26080 at 22.750 kb on + strand, within LU632_RS26080 at 22.751 kb on - strand, within LU632_RS26080 at 22.751 kb on - strand, within LU632_RS26080 at 22.982 kb on - strand, within LU632_RS26080 at 23.016 kb on + strand, within LU632_RS26080 at 23.017 kb on - strand, within LU632_RS26080 at 23.095 kb on + strand, within LU632_RS26080 at 23.095 kb on - strand, within LU632_RS26080 at 23.107 kb on + strand, within LU632_RS26080 at 23.108 kb on - strand, within LU632_RS26080 at 23.129 kb on - strand, within LU632_RS26080 at 23.339 kb on - strand, within LU632_RS26080 at 23.371 kb on + strand, within LU632_RS26080 at 23.386 kb on + strand, within LU632_RS26080 at 23.386 kb on + strand, within LU632_RS26080 at 23.404 kb on - strand, within LU632_RS26080 at 23.404 kb on - strand, within LU632_RS26080 at 23.404 kb on - strand, within LU632_RS26080 at 23.404 kb on - strand, within LU632_RS26080 at 23.405 kb on + strand, within LU632_RS26080 at 23.406 kb on + strand, within LU632_RS26080 at 23.406 kb on - strand, within LU632_RS26080 at 23.406 kb on - strand, within LU632_RS26080 at 23.406 kb on - strand, within LU632_RS26080 at 23.406 kb on - strand, within LU632_RS26080 at 23.406 kb on - strand, within LU632_RS26080 at 23.406 kb on - strand, within LU632_RS26080 at 23.406 kb on - strand, within LU632_RS26080 at 23.511 kb on - strand at 23.511 kb on - strand at 23.511 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.602 kb on + strand at 23.608 kb on + strand at 23.608 kb on + strand at 23.616 kb on + strand at 23.622 kb on + strand at 23.706 kb on + strand at 23.706 kb on + strand at 23.707 kb on - strand at 23.707 kb on - strand at 23.707 kb on - strand at 23.714 kb on + strand at 23.714 kb on + strand at 23.723 kb on + strand at 23.723 kb on + strand at 23.786 kb on + strand at 23.786 kb on + strand at 23.786 kb on + strand at 23.786 kb on + strand at 23.786 kb on + strand at 23.786 kb on + strand at 23.787 kb on - strand at 23.787 kb on - strand at 23.787 kb on - strand at 23.787 kb on - strand at 23.835 kb on + strand at 23.836 kb on - strand at 23.862 kb on + strand at 23.897 kb on + strand at 24.009 kb on + strand, within LU632_RS26085 at 24.010 kb on - strand, within LU632_RS26085 at 24.023 kb on + strand, within LU632_RS26085 at 24.066 kb on + strand, within LU632_RS26085 at 24.150 kb on - strand, within LU632_RS26085 at 24.177 kb on - strand, within LU632_RS26085 at 24.177 kb on - strand, within LU632_RS26085 at 24.215 kb on - strand, within LU632_RS26085 at 24.215 kb on - strand, within LU632_RS26085 at 24.270 kb on - strand, within LU632_RS26085 at 24.294 kb on + strand, within LU632_RS26085 at 24.295 kb on - strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.338 kb on + strand, within LU632_RS26085 at 24.338 kb on + strand, within LU632_RS26085 at 24.338 kb on + strand, within LU632_RS26085 at 24.338 kb on + strand, within LU632_RS26085 at 24.339 kb on - strand, within LU632_RS26085 at 24.339 kb on - strand, within LU632_RS26085 at 24.339 kb on - strand, within LU632_RS26085 at 24.394 kb on - strand, within LU632_RS26085 at 24.415 kb on - strand, within LU632_RS26085 at 24.415 kb on - strand, within LU632_RS26085 at 24.434 kb on + strand, within LU632_RS26085 at 24.434 kb on + strand, within LU632_RS26085 at 24.435 kb on - strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.457 kb on - strand, within LU632_RS26085 at 24.457 kb on - strand, within LU632_RS26085 at 24.457 kb on - strand, within LU632_RS26085 at 24.457 kb on - strand, within LU632_RS26085 at 24.457 kb on - strand, within LU632_RS26085
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 21,539 - -0.9 21,559 - -1.4 21,611 + +1.2 21,612 - -2.0 21,612 - -0.8 21,657 + +0.9 21,658 - -0.4 21,658 - -0.1 21,658 - -0.2 21,658 - -0.3 21,658 - -0.4 21,658 - -2.4 21,662 + -0.3 21,662 + +0.2 21,662 + -0.6 21,662 + -0.4 21,663 - -0.7 21,663 - -0.9 21,666 + -0.7 21,666 + -0.6 21,666 + -0.2 21,666 + -0.4 21,666 + -0.8 21,666 + +0.2 21,892 + LU632_RS26075 0.31 -1.4 21,892 + LU632_RS26075 0.31 +0.0 21,893 - LU632_RS26075 0.31 -1.4 21,893 - LU632_RS26075 0.31 -1.1 21,897 + LU632_RS26075 0.32 -0.4 21,898 - LU632_RS26075 0.32 -1.8 21,898 - LU632_RS26075 0.32 +0.2 21,912 - LU632_RS26075 0.34 -0.0 21,933 - LU632_RS26075 0.36 -0.7 22,004 + LU632_RS26075 0.44 -0.4 22,005 - LU632_RS26075 0.44 -0.8 22,005 - LU632_RS26075 0.44 -0.8 22,005 - LU632_RS26075 0.44 -0.4 22,040 + LU632_RS26075 0.48 -2.2 22,116 + LU632_RS26075 0.57 +0.1 22,117 - LU632_RS26075 0.57 -1.4 22,206 + LU632_RS26075 0.67 -0.1 22,229 + LU632_RS26075 0.69 -2.6 22,230 - LU632_RS26075 0.69 -1.3 22,269 + LU632_RS26075 0.74 -0.9 22,479 + -0.0 22,480 - -1.0 22,500 - +0.1 22,512 + -0.5 22,512 + -1.0 22,512 + -1.3 22,512 + -0.4 22,512 + -0.8 22,513 - -0.3 22,515 - -0.0 22,563 + -1.1 22,564 - -0.7 22,566 + +0.9 22,566 + -1.0 22,566 + -0.4 22,567 - -0.8 22,567 - +0.5 22,580 - +0.6 22,675 + LU632_RS26080 0.16 -0.0 22,684 + LU632_RS26080 0.17 -0.5 22,684 + LU632_RS26080 0.17 +0.2 22,684 + LU632_RS26080 0.17 -0.8 22,701 + LU632_RS26080 0.19 -1.7 22,750 + LU632_RS26080 0.24 -0.3 22,751 - LU632_RS26080 0.24 -0.5 22,751 - LU632_RS26080 0.24 -1.4 22,982 - LU632_RS26080 0.46 -0.6 23,016 + LU632_RS26080 0.50 +0.6 23,017 - LU632_RS26080 0.50 -1.4 23,095 + LU632_RS26080 0.57 -2.0 23,095 - LU632_RS26080 0.57 -1.4 23,107 + LU632_RS26080 0.59 -1.1 23,108 - LU632_RS26080 0.59 -0.2 23,129 - LU632_RS26080 0.61 -0.6 23,339 - LU632_RS26080 0.81 -0.4 23,371 + LU632_RS26080 0.85 -0.4 23,386 + LU632_RS26080 0.86 +0.6 23,386 + LU632_RS26080 0.86 -1.4 23,404 - LU632_RS26080 0.88 -2.0 23,404 - LU632_RS26080 0.88 -0.4 23,404 - LU632_RS26080 0.88 -1.0 23,404 - LU632_RS26080 0.88 -0.4 23,405 + LU632_RS26080 0.88 -1.0 23,406 + LU632_RS26080 0.88 -0.4 23,406 - LU632_RS26080 0.88 -1.0 23,406 - LU632_RS26080 0.88 +1.2 23,406 - LU632_RS26080 0.88 -0.6 23,406 - LU632_RS26080 0.88 +1.6 23,406 - LU632_RS26080 0.88 -1.3 23,406 - LU632_RS26080 0.88 -0.8 23,406 - LU632_RS26080 0.88 -0.1 23,511 - -0.0 23,511 - -0.5 23,511 - -0.9 23,549 - -1.2 23,549 - -1.4 23,602 + -1.4 23,608 + -0.8 23,608 + +1.2 23,616 + -0.4 23,622 + +0.2 23,706 + -0.7 23,706 + +0.7 23,707 - +0.3 23,707 - +0.4 23,707 - -1.0 23,714 + -0.4 23,714 + +0.0 23,723 + -0.7 23,723 + -0.2 23,786 + -0.2 23,786 + +0.2 23,786 + -0.0 23,786 + -0.1 23,786 + -0.3 23,786 + -0.7 23,787 - -1.7 23,787 - -0.8 23,787 - +0.6 23,787 - +0.2 23,835 + +0.5 23,836 - +1.2 23,862 + -0.4 23,897 + +2.4 24,009 + LU632_RS26085 0.18 +0.7 24,010 - LU632_RS26085 0.18 -0.4 24,023 + LU632_RS26085 0.19 +0.1 24,066 + LU632_RS26085 0.23 -0.2 24,150 - LU632_RS26085 0.29 +0.1 24,177 - LU632_RS26085 0.31 -0.0 24,177 - LU632_RS26085 0.31 -0.0 24,215 - LU632_RS26085 0.35 -0.7 24,215 - LU632_RS26085 0.35 +0.4 24,270 - LU632_RS26085 0.39 -1.4 24,294 + LU632_RS26085 0.41 +0.1 24,295 - LU632_RS26085 0.41 +0.2 24,296 + LU632_RS26085 0.41 +0.0 24,296 + LU632_RS26085 0.41 +0.0 24,296 + LU632_RS26085 0.41 +0.0 24,296 + LU632_RS26085 0.41 -0.4 24,296 + LU632_RS26085 0.41 -0.2 24,296 + LU632_RS26085 0.41 -0.3 24,296 + LU632_RS26085 0.41 -1.2 24,296 + LU632_RS26085 0.41 -0.4 24,296 + LU632_RS26085 0.41 +0.9 24,296 + LU632_RS26085 0.41 +0.6 24,297 - LU632_RS26085 0.41 -0.6 24,297 - LU632_RS26085 0.41 -0.4 24,297 - LU632_RS26085 0.41 -0.7 24,297 - LU632_RS26085 0.41 +1.2 24,297 - LU632_RS26085 0.41 +0.7 24,297 - LU632_RS26085 0.41 -0.5 24,297 - LU632_RS26085 0.41 +1.8 24,297 - LU632_RS26085 0.41 -0.6 24,297 - LU632_RS26085 0.41 -0.1 24,297 - LU632_RS26085 0.41 -1.0 24,338 + LU632_RS26085 0.44 -0.7 24,338 + LU632_RS26085 0.44 +0.9 24,338 + LU632_RS26085 0.44 +0.6 24,338 + LU632_RS26085 0.44 +0.6 24,339 - LU632_RS26085 0.44 +0.9 24,339 - LU632_RS26085 0.44 -0.1 24,339 - LU632_RS26085 0.44 +0.6 24,394 - LU632_RS26085 0.49 -0.4 24,415 - LU632_RS26085 0.51 +0.2 24,415 - LU632_RS26085 0.51 +0.0 24,434 + LU632_RS26085 0.52 -1.0 24,434 + LU632_RS26085 0.52 +0.8 24,435 - LU632_RS26085 0.52 -0.4 24,456 + LU632_RS26085 0.54 +0.2 24,456 + LU632_RS26085 0.54 -0.4 24,456 + LU632_RS26085 0.54 -0.3 24,456 + LU632_RS26085 0.54 +0.4 24,456 + LU632_RS26085 0.54 -0.9 24,456 + LU632_RS26085 0.54 -0.2 24,456 + LU632_RS26085 0.54 +0.2 24,457 - LU632_RS26085 0.54 -2.0 24,457 - LU632_RS26085 0.54 -1.3 24,457 - LU632_RS26085 0.54 -0.0 24,457 - LU632_RS26085 0.54 -2.0 24,457 - LU632_RS26085 0.54 -0.8
Or see this region's nucleotide sequence