Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26055 and LU632_RS26060 are separated by 1 nucleotides LU632_RS26060 and LU632_RS26065 overlap by 20 nucleotides LU632_RS26065 and LU632_RS26070 are separated by 118 nucleotides LU632_RS26070 and LU632_RS26075 overlap by 23 nucleotides LU632_RS26075 and LU632_RS26080 are separated by 11 nucleotides
LU632_RS26055: LU632_RS26055 - DUF2442 domain-containing protein, at 19,202 to 19,450
_RS26055
LU632_RS26060: LU632_RS26060 - CCDC90 family protein, at 19,452 to 19,715
_RS26060
LU632_RS26065: LU632_RS26065 - recombinase family protein, at 19,696 to 20,274
_RS26065
LU632_RS26070: LU632_RS26070 - phage terminase large subunit, at 20,393 to 21,637
_RS26070
LU632_RS26075: LU632_RS26075 - hypothetical protein, at 21,615 to 22,499
_RS26075
LU632_RS26080: LU632_RS26080 - site-specific integrase, at 22,511 to 23,527
_RS26080
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.436 kb on - strand at 19.472 kb on + strand at 19.473 kb on - strand at 19.473 kb on - strand at 19.602 kb on - strand, within LU632_RS26060 at 19.750 kb on + strand at 19.750 kb on + strand at 19.750 kb on + strand at 19.750 kb on + strand at 19.755 kb on + strand, within LU632_RS26065 at 19.755 kb on + strand, within LU632_RS26065 at 19.914 kb on + strand, within LU632_RS26065 at 20.129 kb on + strand, within LU632_RS26065 at 20.129 kb on + strand, within LU632_RS26065 at 20.215 kb on + strand, within LU632_RS26065 at 20.275 kb on + strand at 20.275 kb on + strand at 20.395 kb on - strand at 20.420 kb on - strand at 20.428 kb on + strand at 20.428 kb on + strand at 20.429 kb on - strand at 20.440 kb on + strand at 20.440 kb on + strand at 20.441 kb on - strand at 20.441 kb on - strand at 20.443 kb on + strand at 20.443 kb on + strand at 20.444 kb on - strand at 20.444 kb on - strand at 20.445 kb on + strand at 20.445 kb on + strand at 20.446 kb on - strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.461 kb on - strand at 20.544 kb on + strand, within LU632_RS26070 at 20.544 kb on + strand, within LU632_RS26070 at 20.567 kb on - strand, within LU632_RS26070 at 20.572 kb on + strand, within LU632_RS26070 at 20.572 kb on + strand, within LU632_RS26070 at 20.573 kb on - strand, within LU632_RS26070 at 20.573 kb on - strand, within LU632_RS26070 at 20.619 kb on - strand, within LU632_RS26070 at 20.662 kb on + strand, within LU632_RS26070 at 20.686 kb on - strand, within LU632_RS26070 at 20.754 kb on + strand, within LU632_RS26070 at 20.755 kb on - strand, within LU632_RS26070 at 20.782 kb on + strand, within LU632_RS26070 at 20.802 kb on + strand, within LU632_RS26070 at 20.811 kb on + strand, within LU632_RS26070 at 20.812 kb on - strand, within LU632_RS26070 at 20.842 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.938 kb on - strand, within LU632_RS26070 at 20.959 kb on + strand, within LU632_RS26070 at 20.960 kb on - strand, within LU632_RS26070 at 20.960 kb on - strand, within LU632_RS26070 at 20.972 kb on + strand, within LU632_RS26070 at 20.972 kb on + strand, within LU632_RS26070 at 20.976 kb on + strand, within LU632_RS26070 at 20.977 kb on - strand, within LU632_RS26070 at 21.001 kb on - strand, within LU632_RS26070 at 21.001 kb on - strand, within LU632_RS26070 at 21.079 kb on - strand, within LU632_RS26070 at 21.079 kb on - strand, within LU632_RS26070 at 21.083 kb on - strand, within LU632_RS26070 at 21.083 kb on - strand, within LU632_RS26070 at 21.116 kb on + strand, within LU632_RS26070 at 21.117 kb on - strand, within LU632_RS26070 at 21.173 kb on + strand, within LU632_RS26070 at 21.173 kb on + strand, within LU632_RS26070 at 21.321 kb on + strand, within LU632_RS26070 at 21.321 kb on + strand, within LU632_RS26070 at 21.321 kb on + strand, within LU632_RS26070 at 21.322 kb on - strand, within LU632_RS26070 at 21.322 kb on - strand, within LU632_RS26070 at 21.322 kb on - strand, within LU632_RS26070 at 21.325 kb on + strand, within LU632_RS26070 at 21.326 kb on - strand, within LU632_RS26070 at 21.349 kb on + strand, within LU632_RS26070 at 21.350 kb on - strand, within LU632_RS26070 at 21.351 kb on + strand, within LU632_RS26070 at 21.351 kb on + strand, within LU632_RS26070 at 21.351 kb on + strand, within LU632_RS26070 at 21.351 kb on + strand, within LU632_RS26070 at 21.351 kb on + strand, within LU632_RS26070 at 21.352 kb on - strand, within LU632_RS26070 at 21.352 kb on - strand, within LU632_RS26070 at 21.352 kb on - strand, within LU632_RS26070 at 21.352 kb on - strand, within LU632_RS26070 at 21.352 kb on - strand, within LU632_RS26070 at 21.352 kb on - strand, within LU632_RS26070 at 21.421 kb on + strand, within LU632_RS26070 at 21.492 kb on + strand, within LU632_RS26070 at 21.492 kb on + strand, within LU632_RS26070 at 21.492 kb on + strand, within LU632_RS26070 at 21.492 kb on + strand, within LU632_RS26070 at 21.492 kb on + strand, within LU632_RS26070 at 21.493 kb on - strand, within LU632_RS26070 at 21.493 kb on - strand, within LU632_RS26070 at 21.498 kb on + strand, within LU632_RS26070 at 21.498 kb on + strand, within LU632_RS26070 at 21.498 kb on + strand, within LU632_RS26070 at 21.499 kb on - strand, within LU632_RS26070 at 21.499 kb on - strand, within LU632_RS26070 at 21.499 kb on - strand, within LU632_RS26070 at 21.539 kb on - strand at 21.559 kb on - strand at 21.611 kb on + strand at 21.612 kb on - strand at 21.612 kb on - strand at 21.657 kb on + strand at 21.658 kb on - strand at 21.658 kb on - strand at 21.658 kb on - strand at 21.658 kb on - strand at 21.658 kb on - strand at 21.658 kb on - strand at 21.662 kb on + strand at 21.662 kb on + strand at 21.662 kb on + strand at 21.662 kb on + strand at 21.663 kb on - strand at 21.663 kb on - strand at 21.666 kb on + strand at 21.666 kb on + strand at 21.666 kb on + strand at 21.666 kb on + strand at 21.666 kb on + strand at 21.666 kb on + strand at 21.892 kb on + strand, within LU632_RS26075 at 21.892 kb on + strand, within LU632_RS26075 at 21.893 kb on - strand, within LU632_RS26075 at 21.893 kb on - strand, within LU632_RS26075 at 21.897 kb on + strand, within LU632_RS26075 at 21.898 kb on - strand, within LU632_RS26075 at 21.898 kb on - strand, within LU632_RS26075 at 21.912 kb on - strand, within LU632_RS26075 at 21.933 kb on - strand, within LU632_RS26075 at 22.004 kb on + strand, within LU632_RS26075 at 22.005 kb on - strand, within LU632_RS26075 at 22.005 kb on - strand, within LU632_RS26075 at 22.005 kb on - strand, within LU632_RS26075 at 22.040 kb on + strand, within LU632_RS26075 at 22.116 kb on + strand, within LU632_RS26075 at 22.117 kb on - strand, within LU632_RS26075 at 22.206 kb on + strand, within LU632_RS26075 at 22.229 kb on + strand, within LU632_RS26075 at 22.230 kb on - strand, within LU632_RS26075 at 22.269 kb on + strand, within LU632_RS26075 at 22.479 kb on + strand at 22.480 kb on - strand at 22.500 kb on - strand at 22.512 kb on + strand at 22.512 kb on + strand at 22.512 kb on + strand at 22.512 kb on + strand at 22.512 kb on + strand at 22.513 kb on - strand at 22.515 kb on - strand at 22.563 kb on + strand at 22.564 kb on - strand at 22.566 kb on + strand at 22.566 kb on + strand at 22.566 kb on + strand at 22.567 kb on - strand at 22.567 kb on - strand at 22.580 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 19,408 + LU632_RS26055 0.83 -1.1 19,408 + LU632_RS26055 0.83 +0.4 19,408 + LU632_RS26055 0.83 -0.7 19,408 + LU632_RS26055 0.83 +0.6 19,408 + LU632_RS26055 0.83 -1.4 19,408 + LU632_RS26055 0.83 -0.7 19,409 - LU632_RS26055 0.83 +0.6 19,409 - LU632_RS26055 0.83 -0.9 19,409 - LU632_RS26055 0.83 +0.1 19,409 - LU632_RS26055 0.83 -0.1 19,409 - LU632_RS26055 0.83 -0.0 19,409 - LU632_RS26055 0.83 +0.6 19,409 - LU632_RS26055 0.83 -0.4 19,409 - LU632_RS26055 0.83 +0.6 19,409 - LU632_RS26055 0.83 -0.5 19,409 - LU632_RS26055 0.83 -1.1 19,409 - LU632_RS26055 0.83 +0.0 19,409 - LU632_RS26055 0.83 -0.4 19,413 + LU632_RS26055 0.85 +0.1 19,413 + LU632_RS26055 0.85 -0.8 19,413 + LU632_RS26055 0.85 -0.3 19,413 + LU632_RS26055 0.85 -1.4 19,413 + LU632_RS26055 0.85 +0.3 19,414 - LU632_RS26055 0.85 -0.1 19,414 - LU632_RS26055 0.85 +0.6 19,414 - LU632_RS26055 0.85 +0.2 19,414 - LU632_RS26055 0.85 -0.2 19,414 - LU632_RS26055 0.85 -0.1 19,414 - LU632_RS26055 0.85 +0.2 19,414 - LU632_RS26055 0.85 +0.1 19,414 - LU632_RS26055 0.85 -1.4 19,436 - -0.2 19,472 + +0.1 19,473 - +0.1 19,473 - +0.0 19,602 - LU632_RS26060 0.57 -0.7 19,750 + -0.6 19,750 + +1.6 19,750 + -0.2 19,750 + +0.9 19,755 + LU632_RS26065 0.10 -0.0 19,755 + LU632_RS26065 0.10 -1.4 19,914 + LU632_RS26065 0.38 -1.4 20,129 + LU632_RS26065 0.75 +0.2 20,129 + LU632_RS26065 0.75 -1.0 20,215 + LU632_RS26065 0.90 -1.0 20,275 + -0.2 20,275 + -0.1 20,395 - +0.5 20,420 - +0.5 20,428 + -1.0 20,428 + +1.6 20,429 - +0.3 20,440 + -2.0 20,440 + +0.4 20,441 - +0.6 20,441 - +0.8 20,443 + -0.7 20,443 + -0.7 20,444 - -0.9 20,444 - -0.6 20,445 + -0.8 20,445 + -1.8 20,446 - -1.3 20,460 + -0.6 20,460 + -0.4 20,460 + -2.8 20,460 + -0.9 20,461 - -0.8 20,544 + LU632_RS26070 0.12 -0.4 20,544 + LU632_RS26070 0.12 -0.7 20,567 - LU632_RS26070 0.14 +0.6 20,572 + LU632_RS26070 0.14 -0.4 20,572 + LU632_RS26070 0.14 -0.7 20,573 - LU632_RS26070 0.14 +0.2 20,573 - LU632_RS26070 0.14 +0.2 20,619 - LU632_RS26070 0.18 -1.4 20,662 + LU632_RS26070 0.22 +0.6 20,686 - LU632_RS26070 0.24 -1.3 20,754 + LU632_RS26070 0.29 -0.0 20,755 - LU632_RS26070 0.29 -0.4 20,782 + LU632_RS26070 0.31 -1.0 20,802 + LU632_RS26070 0.33 +0.6 20,811 + LU632_RS26070 0.34 -0.8 20,812 - LU632_RS26070 0.34 -2.4 20,842 + LU632_RS26070 0.36 -1.0 20,937 + LU632_RS26070 0.44 -1.2 20,937 + LU632_RS26070 0.44 +1.2 20,937 + LU632_RS26070 0.44 -0.7 20,937 + LU632_RS26070 0.44 -0.2 20,938 - LU632_RS26070 0.44 -0.9 20,959 + LU632_RS26070 0.45 -1.4 20,960 - LU632_RS26070 0.46 -2.0 20,960 - LU632_RS26070 0.46 -0.0 20,972 + LU632_RS26070 0.47 -0.7 20,972 + LU632_RS26070 0.47 +1.6 20,976 + LU632_RS26070 0.47 -0.8 20,977 - LU632_RS26070 0.47 +0.2 21,001 - LU632_RS26070 0.49 -1.4 21,001 - LU632_RS26070 0.49 -1.5 21,079 - LU632_RS26070 0.55 -0.7 21,079 - LU632_RS26070 0.55 -0.9 21,083 - LU632_RS26070 0.55 -0.9 21,083 - LU632_RS26070 0.55 +0.2 21,116 + LU632_RS26070 0.58 +0.2 21,117 - LU632_RS26070 0.58 +0.8 21,173 + LU632_RS26070 0.63 +1.2 21,173 + LU632_RS26070 0.63 -0.4 21,321 + LU632_RS26070 0.75 -0.1 21,321 + LU632_RS26070 0.75 -0.5 21,321 + LU632_RS26070 0.75 -1.4 21,322 - LU632_RS26070 0.75 -0.9 21,322 - LU632_RS26070 0.75 -0.8 21,322 - LU632_RS26070 0.75 +0.1 21,325 + LU632_RS26070 0.75 -0.7 21,326 - LU632_RS26070 0.75 -1.1 21,349 + LU632_RS26070 0.77 +0.6 21,350 - LU632_RS26070 0.77 -1.0 21,351 + LU632_RS26070 0.77 -1.4 21,351 + LU632_RS26070 0.77 -0.4 21,351 + LU632_RS26070 0.77 -0.2 21,351 + LU632_RS26070 0.77 -0.1 21,351 + LU632_RS26070 0.77 -2.4 21,352 - LU632_RS26070 0.77 -0.4 21,352 - LU632_RS26070 0.77 +0.9 21,352 - LU632_RS26070 0.77 +0.6 21,352 - LU632_RS26070 0.77 -1.1 21,352 - LU632_RS26070 0.77 -3.1 21,352 - LU632_RS26070 0.77 -0.6 21,421 + LU632_RS26070 0.83 -1.4 21,492 + LU632_RS26070 0.88 -0.4 21,492 + LU632_RS26070 0.88 +0.2 21,492 + LU632_RS26070 0.88 -0.4 21,492 + LU632_RS26070 0.88 +0.2 21,492 + LU632_RS26070 0.88 -0.6 21,493 - LU632_RS26070 0.88 -0.2 21,493 - LU632_RS26070 0.88 -1.4 21,498 + LU632_RS26070 0.89 -1.2 21,498 + LU632_RS26070 0.89 -0.2 21,498 + LU632_RS26070 0.89 +0.2 21,499 - LU632_RS26070 0.89 -1.8 21,499 - LU632_RS26070 0.89 -1.4 21,499 - LU632_RS26070 0.89 -1.4 21,539 - -0.9 21,559 - -1.4 21,611 + +1.2 21,612 - -2.0 21,612 - -0.8 21,657 + +0.9 21,658 - -0.4 21,658 - -0.1 21,658 - -0.2 21,658 - -0.3 21,658 - -0.4 21,658 - -2.4 21,662 + -0.3 21,662 + +0.2 21,662 + -0.6 21,662 + -0.4 21,663 - -0.7 21,663 - -0.9 21,666 + -0.7 21,666 + -0.6 21,666 + -0.2 21,666 + -0.4 21,666 + -0.8 21,666 + +0.2 21,892 + LU632_RS26075 0.31 -1.4 21,892 + LU632_RS26075 0.31 +0.0 21,893 - LU632_RS26075 0.31 -1.4 21,893 - LU632_RS26075 0.31 -1.1 21,897 + LU632_RS26075 0.32 -0.4 21,898 - LU632_RS26075 0.32 -1.8 21,898 - LU632_RS26075 0.32 +0.2 21,912 - LU632_RS26075 0.34 -0.0 21,933 - LU632_RS26075 0.36 -0.7 22,004 + LU632_RS26075 0.44 -0.4 22,005 - LU632_RS26075 0.44 -0.8 22,005 - LU632_RS26075 0.44 -0.8 22,005 - LU632_RS26075 0.44 -0.4 22,040 + LU632_RS26075 0.48 -2.2 22,116 + LU632_RS26075 0.57 +0.1 22,117 - LU632_RS26075 0.57 -1.4 22,206 + LU632_RS26075 0.67 -0.1 22,229 + LU632_RS26075 0.69 -2.6 22,230 - LU632_RS26075 0.69 -1.3 22,269 + LU632_RS26075 0.74 -0.9 22,479 + -0.0 22,480 - -1.0 22,500 - +0.1 22,512 + -0.5 22,512 + -1.0 22,512 + -1.3 22,512 + -0.4 22,512 + -0.8 22,513 - -0.3 22,515 - -0.0 22,563 + -1.1 22,564 - -0.7 22,566 + +0.9 22,566 + -1.0 22,566 + -0.4 22,567 - -0.8 22,567 - +0.5 22,580 - +0.6
Or see this region's nucleotide sequence