Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25930

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25930 and LU632_RS25935 are separated by 56 nucleotides LU632_RS25930: LU632_RS25930 - acyltransferase, at 1 to 1,116 _RS25930 LU632_RS25935: LU632_RS25935 - phage tail protein, at 1,173 to 2,048 _RS25935 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.044 kb on + strandat 0.063 kb on + strandat 0.064 kb on - strandat 0.105 kb on + strandat 0.106 kb on - strandat 0.113 kb on + strand, within LU632_RS25930at 0.125 kb on + strand, within LU632_RS25930at 0.141 kb on + strand, within LU632_RS25930at 0.187 kb on + strand, within LU632_RS25930at 0.187 kb on + strand, within LU632_RS25930at 0.188 kb on - strand, within LU632_RS25930at 0.188 kb on - strand, within LU632_RS25930at 0.240 kb on + strand, within LU632_RS25930at 0.241 kb on - strand, within LU632_RS25930at 0.258 kb on - strand, within LU632_RS25930at 0.268 kb on + strand, within LU632_RS25930at 0.269 kb on - strand, within LU632_RS25930at 0.271 kb on + strand, within LU632_RS25930at 0.271 kb on + strand, within LU632_RS25930at 0.271 kb on + strand, within LU632_RS25930at 0.271 kb on + strand, within LU632_RS25930at 0.272 kb on - strand, within LU632_RS25930at 0.272 kb on - strand, within LU632_RS25930at 0.275 kb on + strand, within LU632_RS25930at 0.275 kb on + strand, within LU632_RS25930at 0.276 kb on - strand, within LU632_RS25930at 0.276 kb on - strand, within LU632_RS25930at 0.316 kb on - strand, within LU632_RS25930at 0.374 kb on - strand, within LU632_RS25930at 0.395 kb on + strand, within LU632_RS25930at 0.396 kb on - strand, within LU632_RS25930at 0.419 kb on - strand, within LU632_RS25930at 0.419 kb on - strand, within LU632_RS25930at 0.443 kb on - strand, within LU632_RS25930at 0.480 kb on - strand, within LU632_RS25930at 0.480 kb on - strand, within LU632_RS25930at 0.499 kb on - strand, within LU632_RS25930at 0.543 kb on + strand, within LU632_RS25930at 0.543 kb on + strand, within LU632_RS25930at 0.543 kb on + strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.624 kb on - strand, within LU632_RS25930at 0.660 kb on + strand, within LU632_RS25930at 0.661 kb on - strand, within LU632_RS25930at 0.661 kb on - strand, within LU632_RS25930at 0.661 kb on - strand, within LU632_RS25930at 0.661 kb on - strand, within LU632_RS25930at 0.664 kb on + strand, within LU632_RS25930at 0.708 kb on - strand, within LU632_RS25930at 0.766 kb on + strand, within LU632_RS25930at 0.862 kb on - strand, within LU632_RS25930at 0.894 kb on - strand, within LU632_RS25930at 1.021 kb on - strandat 1.024 kb on + strandat 1.185 kb on - strandat 1.187 kb on - strandat 1.197 kb on + strandat 1.197 kb on + strandat 1.242 kb on + strandat 1.242 kb on + strandat 1.242 kb on + strandat 1.242 kb on + strandat 1.243 kb on - strandat 1.243 kb on - strandat 1.244 kb on + strandat 1.253 kb on + strandat 1.253 kb on + strandat 1.254 kb on - strandat 1.274 kb on + strand, within LU632_RS25935at 1.275 kb on - strand, within LU632_RS25935at 1.275 kb on - strand, within LU632_RS25935at 1.275 kb on - strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.302 kb on - strand, within LU632_RS25935at 1.302 kb on - strand, within LU632_RS25935at 1.302 kb on - strand, within LU632_RS25935at 1.302 kb on - strand, within LU632_RS25935at 1.302 kb on - strand, within LU632_RS25935at 1.349 kb on + strand, within LU632_RS25935at 1.349 kb on + strand, within LU632_RS25935at 1.401 kb on + strand, within LU632_RS25935at 1.401 kb on + strand, within LU632_RS25935at 1.401 kb on + strand, within LU632_RS25935at 1.401 kb on + strand, within LU632_RS25935at 1.401 kb on + strand, within LU632_RS25935at 1.402 kb on - strand, within LU632_RS25935at 1.402 kb on - strand, within LU632_RS25935at 1.402 kb on - strand, within LU632_RS25935at 1.412 kb on + strand, within LU632_RS25935at 1.412 kb on - strand, within LU632_RS25935at 1.413 kb on - strand, within LU632_RS25935at 1.419 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.457 kb on + strand, within LU632_RS25935at 1.457 kb on + strand, within LU632_RS25935at 1.457 kb on + strand, within LU632_RS25935at 1.457 kb on + strand, within LU632_RS25935at 1.457 kb on + strand, within LU632_RS25935at 1.457 kb on + strand, within LU632_RS25935at 1.458 kb on - strand, within LU632_RS25935at 1.458 kb on - strand, within LU632_RS25935at 1.458 kb on - strand, within LU632_RS25935at 1.458 kb on - strand, within LU632_RS25935at 1.460 kb on + strand, within LU632_RS25935at 1.460 kb on + strand, within LU632_RS25935at 1.460 kb on + strand, within LU632_RS25935at 1.461 kb on - strand, within LU632_RS25935at 1.481 kb on + strand, within LU632_RS25935at 1.481 kb on + strand, within LU632_RS25935at 1.481 kb on + strand, within LU632_RS25935at 1.482 kb on - strand, within LU632_RS25935at 1.556 kb on + strand, within LU632_RS25935at 1.556 kb on + strand, within LU632_RS25935at 1.557 kb on - strand, within LU632_RS25935at 1.557 kb on - strand, within LU632_RS25935at 1.592 kb on + strand, within LU632_RS25935at 1.655 kb on + strand, within LU632_RS25935at 1.655 kb on + strand, within LU632_RS25935at 1.655 kb on + strand, within LU632_RS25935at 1.655 kb on + strand, within LU632_RS25935at 1.655 kb on + strand, within LU632_RS25935at 1.656 kb on - strand, within LU632_RS25935at 1.656 kb on - strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.718 kb on + strand, within LU632_RS25935at 1.718 kb on + strand, within LU632_RS25935at 1.718 kb on + strand, within LU632_RS25935at 1.719 kb on - strand, within LU632_RS25935at 1.719 kb on - strand, within LU632_RS25935at 1.719 kb on - strand, within LU632_RS25935at 1.749 kb on - strand, within LU632_RS25935at 1.749 kb on - strand, within LU632_RS25935at 1.749 kb on - strand, within LU632_RS25935at 1.784 kb on - strand, within LU632_RS25935at 1.784 kb on - strand, within LU632_RS25935at 1.784 kb on - strand, within LU632_RS25935at 1.820 kb on - strand, within LU632_RS25935at 1.934 kb on + strand, within LU632_RS25935at 2.013 kb on - strandat 2.013 kb on - strandat 2.015 kb on + strandat 2.016 kb on - strandat 2.076 kb on - strandat 2.076 kb on - strandat 2.076 kb on - strandat 2.076 kb on - strandat 2.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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44 + +1.6
63 + +0.9
64 - -0.5
105 + -2.0
106 - -1.2
113 + LU632_RS25930 0.10 -0.8
125 + LU632_RS25930 0.11 -1.1
141 + LU632_RS25930 0.13 +0.2
187 + LU632_RS25930 0.17 -1.2
187 + LU632_RS25930 0.17 -1.8
188 - LU632_RS25930 0.17 -1.2
188 - LU632_RS25930 0.17 -0.4
240 + LU632_RS25930 0.21 +0.6
241 - LU632_RS25930 0.22 -0.6
258 - LU632_RS25930 0.23 -0.3
268 + LU632_RS25930 0.24 -1.2
269 - LU632_RS25930 0.24 -0.0
271 + LU632_RS25930 0.24 -1.4
271 + LU632_RS25930 0.24 -0.4
271 + LU632_RS25930 0.24 -1.3
271 + LU632_RS25930 0.24 -0.6
272 - LU632_RS25930 0.24 +0.2
272 - LU632_RS25930 0.24 -0.0
275 + LU632_RS25930 0.25 -0.4
275 + LU632_RS25930 0.25 -0.9
276 - LU632_RS25930 0.25 -0.8
276 - LU632_RS25930 0.25 -0.1
316 - LU632_RS25930 0.28 -1.4
374 - LU632_RS25930 0.33 -1.6
395 + LU632_RS25930 0.35 -1.2
396 - LU632_RS25930 0.35 -0.6
419 - LU632_RS25930 0.37 -0.4
419 - LU632_RS25930 0.37 -0.0
443 - LU632_RS25930 0.40 -0.8
480 - LU632_RS25930 0.43 -1.4
480 - LU632_RS25930 0.43 -0.5
499 - LU632_RS25930 0.45 -0.7
543 + LU632_RS25930 0.49 -0.8
543 + LU632_RS25930 0.49 -1.4
543 + LU632_RS25930 0.49 -1.0
544 - LU632_RS25930 0.49 -0.0
544 - LU632_RS25930 0.49 +0.6
544 - LU632_RS25930 0.49 -0.8
544 - LU632_RS25930 0.49 -0.5
544 - LU632_RS25930 0.49 -1.4
544 - LU632_RS25930 0.49 -0.8
624 - LU632_RS25930 0.56 -1.4
660 + LU632_RS25930 0.59 -1.3
661 - LU632_RS25930 0.59 -1.4
661 - LU632_RS25930 0.59 -0.9
661 - LU632_RS25930 0.59 +0.1
661 - LU632_RS25930 0.59 -0.4
664 + LU632_RS25930 0.59 +0.0
708 - LU632_RS25930 0.63 -1.0
766 + LU632_RS25930 0.69 +0.1
862 - LU632_RS25930 0.77 -1.3
894 - LU632_RS25930 0.80 -0.9
1,021 - -0.4
1,024 + -1.4
1,185 - +0.6
1,187 - +0.4
1,197 + -0.0
1,197 + +0.2
1,242 + +1.2
1,242 + -0.2
1,242 + +0.3
1,242 + -0.4
1,243 - -0.8
1,243 - +0.3
1,244 + -0.4
1,253 + +1.2
1,253 + -1.2
1,254 - +0.6
1,274 + LU632_RS25935 0.12 +0.2
1,275 - LU632_RS25935 0.12 +0.2
1,275 - LU632_RS25935 0.12 -0.3
1,275 - LU632_RS25935 0.12 +0.5
1,301 + LU632_RS25935 0.15 -0.2
1,301 + LU632_RS25935 0.15 -0.0
1,301 + LU632_RS25935 0.15 -0.4
1,301 + LU632_RS25935 0.15 -0.0
1,301 + LU632_RS25935 0.15 +1.6
1,301 + LU632_RS25935 0.15 -0.3
1,301 + LU632_RS25935 0.15 -0.2
1,302 - LU632_RS25935 0.15 -0.8
1,302 - LU632_RS25935 0.15 +0.1
1,302 - LU632_RS25935 0.15 +0.3
1,302 - LU632_RS25935 0.15 -0.2
1,302 - LU632_RS25935 0.15 +0.8
1,349 + LU632_RS25935 0.20 -0.1
1,349 + LU632_RS25935 0.20 +0.2
1,401 + LU632_RS25935 0.26 +0.1
1,401 + LU632_RS25935 0.26 -0.6
1,401 + LU632_RS25935 0.26 -0.5
1,401 + LU632_RS25935 0.26 -0.2
1,401 + LU632_RS25935 0.26 -0.7
1,402 - LU632_RS25935 0.26 -0.1
1,402 - LU632_RS25935 0.26 -2.4
1,402 - LU632_RS25935 0.26 -0.4
1,412 + LU632_RS25935 0.27 -0.0
1,412 - LU632_RS25935 0.27 -1.2
1,413 - LU632_RS25935 0.27 +0.1
1,419 + LU632_RS25935 0.28 +0.0
1,455 + LU632_RS25935 0.32 -0.4
1,455 + LU632_RS25935 0.32 +0.0
1,455 + LU632_RS25935 0.32 +0.6
1,455 + LU632_RS25935 0.32 -0.0
1,455 + LU632_RS25935 0.32 +1.9
1,455 + LU632_RS25935 0.32 +2.4
1,455 + LU632_RS25935 0.32 -0.4
1,455 - LU632_RS25935 0.32 +0.1
1,456 - LU632_RS25935 0.32 +0.1
1,456 - LU632_RS25935 0.32 -1.0
1,456 - LU632_RS25935 0.32 +0.6
1,456 - LU632_RS25935 0.32 +0.2
1,456 - LU632_RS25935 0.32 +1.1
1,456 - LU632_RS25935 0.32 +0.4
1,456 - LU632_RS25935 0.32 +0.1
1,456 - LU632_RS25935 0.32 -0.8
1,456 - LU632_RS25935 0.32 -0.6
1,457 + LU632_RS25935 0.32 +1.2
1,457 + LU632_RS25935 0.32 -0.7
1,457 + LU632_RS25935 0.32 -0.1
1,457 + LU632_RS25935 0.32 -0.7
1,457 + LU632_RS25935 0.32 -0.1
1,457 + LU632_RS25935 0.32 -2.4
1,458 - LU632_RS25935 0.33 -0.7
1,458 - LU632_RS25935 0.33 -0.5
1,458 - LU632_RS25935 0.33 -1.6
1,458 - LU632_RS25935 0.33 +0.2
1,460 + LU632_RS25935 0.33 -0.1
1,460 + LU632_RS25935 0.33 -0.1
1,460 + LU632_RS25935 0.33 -0.4
1,461 - LU632_RS25935 0.33 -0.8
1,481 + LU632_RS25935 0.35 +0.1
1,481 + LU632_RS25935 0.35 -0.8
1,481 + LU632_RS25935 0.35 -1.0
1,482 - LU632_RS25935 0.35 -1.0
1,556 + LU632_RS25935 0.44 -0.1
1,556 + LU632_RS25935 0.44 -0.4
1,557 - LU632_RS25935 0.44 +0.1
1,557 - LU632_RS25935 0.44 +0.7
1,592 + LU632_RS25935 0.48 +0.7
1,655 + LU632_RS25935 0.55 +0.3
1,655 + LU632_RS25935 0.55 +1.1
1,655 + LU632_RS25935 0.55 -0.1
1,655 + LU632_RS25935 0.55 -0.3
1,655 + LU632_RS25935 0.55 -0.4
1,656 - LU632_RS25935 0.55 -0.4
1,656 - LU632_RS25935 0.55 -0.4
1,708 + LU632_RS25935 0.61 +0.8
1,708 + LU632_RS25935 0.61 +0.4
1,708 + LU632_RS25935 0.61 -0.4
1,708 + LU632_RS25935 0.61 -0.4
1,708 + LU632_RS25935 0.61 -1.4
1,708 + LU632_RS25935 0.61 -0.4
1,708 + LU632_RS25935 0.61 -0.4
1,708 + LU632_RS25935 0.61 -0.8
1,708 + LU632_RS25935 0.61 -0.6
1,708 + LU632_RS25935 0.61 -0.5
1,708 + LU632_RS25935 0.61 +0.6
1,708 + LU632_RS25935 0.61 -1.1
1,709 - LU632_RS25935 0.61 -0.0
1,709 - LU632_RS25935 0.61 +0.2
1,709 - LU632_RS25935 0.61 -0.4
1,709 - LU632_RS25935 0.61 -0.4
1,709 - LU632_RS25935 0.61 -0.7
1,709 - LU632_RS25935 0.61 +0.9
1,709 - LU632_RS25935 0.61 -0.4
1,709 - LU632_RS25935 0.61 +0.4
1,709 - LU632_RS25935 0.61 +0.5
1,709 - LU632_RS25935 0.61 +0.5
1,709 - LU632_RS25935 0.61 -0.6
1,709 - LU632_RS25935 0.61 -1.0
1,709 - LU632_RS25935 0.61 -0.4
1,709 - LU632_RS25935 0.61 +0.6
1,709 - LU632_RS25935 0.61 -0.4
1,709 - LU632_RS25935 0.61 -0.8
1,709 - LU632_RS25935 0.61 +0.3
1,709 - LU632_RS25935 0.61 +0.6
1,709 - LU632_RS25935 0.61 -0.2
1,709 - LU632_RS25935 0.61 -1.2
1,709 - LU632_RS25935 0.61 -0.6
1,709 - LU632_RS25935 0.61 -0.1
1,718 + LU632_RS25935 0.62 +0.1
1,718 + LU632_RS25935 0.62 -0.1
1,718 + LU632_RS25935 0.62 +1.6
1,719 - LU632_RS25935 0.62 +0.7
1,719 - LU632_RS25935 0.62 +0.0
1,719 - LU632_RS25935 0.62 +1.2
1,749 - LU632_RS25935 0.66 +0.2
1,749 - LU632_RS25935 0.66 +0.1
1,749 - LU632_RS25935 0.66 +1.4
1,784 - LU632_RS25935 0.70 -0.4
1,784 - LU632_RS25935 0.70 -0.2
1,784 - LU632_RS25935 0.70 -0.2
1,820 - LU632_RS25935 0.74 -0.1
1,934 + LU632_RS25935 0.87 +0.1
2,013 - -0.0
2,013 - -0.2
2,015 + -1.0
2,016 - +0.4
2,076 - -0.2
2,076 - +0.6
2,076 - -0.2
2,076 - -0.2
2,076 - -0.6

Or see this region's nucleotide sequence