Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25020 and LU632_RS25025 overlap by 4 nucleotides LU632_RS25025 and LU632_RS25030 overlap by 1 nucleotides LU632_RS25030 and LU632_RS25035 overlap by 4 nucleotides LU632_RS25035 and LU632_RS25040 overlap by 11 nucleotides LU632_RS25040 and LU632_RS25045 are separated by 40 nucleotides
LU632_RS25020: LU632_RS25020 - hypothetical protein, at 4,770,047 to 4,770,295
_RS25020
LU632_RS25025: LU632_RS25025 - hypothetical protein, at 4,770,292 to 4,771,098
_RS25025
LU632_RS25030: LU632_RS25030 - hypothetical protein, at 4,771,098 to 4,771,310
_RS25030
LU632_RS25035: LU632_RS25035 - hypothetical protein, at 4,771,307 to 4,771,753
_RS25035
LU632_RS25040: LU632_RS25040 - regulatory protein GemA, at 4,771,743 to 4,772,240
_RS25040
LU632_RS25045: LU632_RS25045 - hypothetical protein, at 4,772,281 to 4,772,715
_RS25045
Position (kb) 4771
4772 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4770.098 kb on + strand, within LU632_RS25020 at 4770.315 kb on + strand at 4770.316 kb on - strand at 4770.348 kb on + strand at 4770.348 kb on + strand at 4770.349 kb on - strand at 4770.349 kb on - strand at 4770.453 kb on + strand, within LU632_RS25025 at 4770.553 kb on + strand, within LU632_RS25025 at 4770.554 kb on - strand, within LU632_RS25025 at 4770.554 kb on - strand, within LU632_RS25025 at 4770.554 kb on - strand, within LU632_RS25025 at 4770.559 kb on - strand, within LU632_RS25025 at 4770.688 kb on + strand, within LU632_RS25025 at 4770.688 kb on + strand, within LU632_RS25025 at 4770.689 kb on - strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.855 kb on + strand, within LU632_RS25025 at 4770.926 kb on + strand, within LU632_RS25025 at 4771.018 kb on + strand at 4771.018 kb on + strand at 4771.020 kb on + strand at 4771.064 kb on - strand at 4771.096 kb on + strand at 4771.096 kb on + strand at 4771.135 kb on + strand, within LU632_RS25030 at 4771.204 kb on - strand, within LU632_RS25030 at 4771.224 kb on - strand, within LU632_RS25030 at 4771.306 kb on + strand at 4771.306 kb on + strand at 4771.306 kb on + strand at 4771.306 kb on + strand at 4771.312 kb on + strand at 4771.312 kb on + strand at 4771.312 kb on + strand at 4771.313 kb on - strand at 4771.361 kb on + strand, within LU632_RS25035 at 4771.378 kb on + strand, within LU632_RS25035 at 4771.379 kb on - strand, within LU632_RS25035 at 4771.502 kb on + strand, within LU632_RS25035 at 4771.503 kb on - strand, within LU632_RS25035 at 4771.543 kb on + strand, within LU632_RS25035 at 4771.717 kb on - strand at 4771.752 kb on - strand at 4771.761 kb on - strand at 4771.810 kb on - strand, within LU632_RS25040 at 4771.859 kb on + strand, within LU632_RS25040 at 4771.859 kb on + strand, within LU632_RS25040 at 4771.859 kb on + strand, within LU632_RS25040 at 4771.860 kb on - strand, within LU632_RS25040 at 4771.975 kb on + strand, within LU632_RS25040 at 4772.038 kb on - strand, within LU632_RS25040 at 4772.038 kb on - strand, within LU632_RS25040 at 4772.052 kb on - strand, within LU632_RS25040 at 4772.063 kb on + strand, within LU632_RS25040 at 4772.092 kb on + strand, within LU632_RS25040 at 4772.196 kb on + strand at 4772.255 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 4,770,098 + LU632_RS25020 0.20 -0.1 4,770,315 + +0.7 4,770,316 - -1.2 4,770,348 + +0.6 4,770,348 + +0.1 4,770,349 - -0.6 4,770,349 - +0.6 4,770,453 + LU632_RS25025 0.20 +0.0 4,770,553 + LU632_RS25025 0.32 +0.6 4,770,554 - LU632_RS25025 0.32 +1.3 4,770,554 - LU632_RS25025 0.32 -1.0 4,770,554 - LU632_RS25025 0.32 -0.7 4,770,559 - LU632_RS25025 0.33 +0.1 4,770,688 + LU632_RS25025 0.49 -0.2 4,770,688 + LU632_RS25025 0.49 +1.4 4,770,689 - LU632_RS25025 0.49 -1.0 4,770,840 + LU632_RS25025 0.68 -0.6 4,770,840 + LU632_RS25025 0.68 +0.0 4,770,840 + LU632_RS25025 0.68 -2.3 4,770,840 + LU632_RS25025 0.68 -0.1 4,770,840 + LU632_RS25025 0.68 +0.3 4,770,840 + LU632_RS25025 0.68 +0.2 4,770,840 + LU632_RS25025 0.68 -0.9 4,770,841 - LU632_RS25025 0.68 -2.4 4,770,841 - LU632_RS25025 0.68 -1.0 4,770,841 - LU632_RS25025 0.68 -0.6 4,770,841 - LU632_RS25025 0.68 +0.8 4,770,841 - LU632_RS25025 0.68 +0.4 4,770,841 - LU632_RS25025 0.68 +0.2 4,770,841 - LU632_RS25025 0.68 -0.4 4,770,841 - LU632_RS25025 0.68 -0.6 4,770,841 - LU632_RS25025 0.68 +0.0 4,770,855 + LU632_RS25025 0.70 -1.1 4,770,926 + LU632_RS25025 0.79 -0.5 4,771,018 + -0.9 4,771,018 + +0.6 4,771,020 + -0.8 4,771,064 - -1.3 4,771,096 + -0.1 4,771,096 + -0.6 4,771,135 + LU632_RS25030 0.17 -0.6 4,771,204 - LU632_RS25030 0.50 -0.2 4,771,224 - LU632_RS25030 0.59 -1.0 4,771,306 + -0.1 4,771,306 + -1.3 4,771,306 + +0.5 4,771,306 + -0.9 4,771,312 + +0.4 4,771,312 + +0.6 4,771,312 + -2.0 4,771,313 - -0.4 4,771,361 + LU632_RS25035 0.12 +1.0 4,771,378 + LU632_RS25035 0.16 +0.0 4,771,379 - LU632_RS25035 0.16 +0.4 4,771,502 + LU632_RS25035 0.44 -1.6 4,771,503 - LU632_RS25035 0.44 +0.3 4,771,543 + LU632_RS25035 0.53 +0.0 4,771,717 - -1.3 4,771,752 - -0.6 4,771,761 - +1.0 4,771,810 - LU632_RS25040 0.13 -3.0 4,771,859 + LU632_RS25040 0.23 -0.7 4,771,859 + LU632_RS25040 0.23 +0.3 4,771,859 + LU632_RS25040 0.23 -0.0 4,771,860 - LU632_RS25040 0.23 -0.6 4,771,975 + LU632_RS25040 0.47 -1.1 4,772,038 - LU632_RS25040 0.59 -0.6 4,772,038 - LU632_RS25040 0.59 -0.4 4,772,052 - LU632_RS25040 0.62 -2.0 4,772,063 + LU632_RS25040 0.64 +2.3 4,772,092 + LU632_RS25040 0.70 +1.3 4,772,196 + +1.0 4,772,255 + +0.0
Or see this region's nucleotide sequence