Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pstS and pstC are separated by 82 nucleotides pstC and pstA overlap by 4 nucleotides pstA and pstB are separated by 43 nucleotides
LU632_RS24880: pstS - phosphate ABC transporter substrate-binding protein PstS, at 4,746,796 to 4,747,836
pstS
LU632_RS24885: pstC - phosphate ABC transporter permease PstC, at 4,747,919 to 4,748,881
pstC
LU632_RS24890: pstA - phosphate ABC transporter permease PstA, at 4,748,878 to 4,749,765
pstA
LU632_RS24895: pstB - phosphate ABC transporter ATP-binding protein PstB, at 4,749,809 to 4,750,579
pstB
Position (kb) 4747
4748
4749 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4746.967 kb on + strand, within pstS at 4746.968 kb on - strand, within pstS at 4747.122 kb on + strand, within pstS at 4747.180 kb on + strand, within pstS at 4747.257 kb on + strand, within pstS at 4747.312 kb on + strand, within pstS at 4747.476 kb on + strand, within pstS at 4747.626 kb on + strand, within pstS at 4747.627 kb on - strand, within pstS at 4747.711 kb on + strand, within pstS at 4747.711 kb on + strand, within pstS at 4747.713 kb on + strand, within pstS at 4747.713 kb on + strand, within pstS at 4747.714 kb on - strand, within pstS at 4747.805 kb on + strand at 4747.805 kb on + strand at 4747.805 kb on + strand at 4747.834 kb on + strand at 4747.834 kb on + strand at 4747.835 kb on - strand at 4748.152 kb on + strand, within pstC at 4748.153 kb on - strand, within pstC at 4748.204 kb on - strand, within pstC at 4748.302 kb on + strand, within pstC at 4748.343 kb on - strand, within pstC at 4748.377 kb on + strand, within pstC at 4748.378 kb on - strand, within pstC at 4748.659 kb on + strand, within pstC at 4748.659 kb on + strand, within pstC at 4748.663 kb on - strand, within pstC at 4748.720 kb on - strand, within pstC at 4748.794 kb on + strand at 4748.929 kb on - strand at 4748.952 kb on + strand at 4749.035 kb on + strand, within pstA at 4749.276 kb on + strand, within pstA at 4749.276 kb on + strand, within pstA at 4749.277 kb on - strand, within pstA at 4749.298 kb on + strand, within pstA at 4749.440 kb on - strand, within pstA at 4749.469 kb on - strand, within pstA at 4749.469 kb on - strand, within pstA at 4749.726 kb on + strand at 4749.727 kb on - strand at 4749.763 kb on + strand at 4749.773 kb on - strand at 4749.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 4,746,967 + pstS LU632_RS24880 0.16 -1.6 4,746,968 - pstS LU632_RS24880 0.17 -0.4 4,747,122 + pstS LU632_RS24880 0.31 +1.0 4,747,180 + pstS LU632_RS24880 0.37 -1.8 4,747,257 + pstS LU632_RS24880 0.44 +0.6 4,747,312 + pstS LU632_RS24880 0.50 +1.6 4,747,476 + pstS LU632_RS24880 0.65 -0.3 4,747,626 + pstS LU632_RS24880 0.80 -1.1 4,747,627 - pstS LU632_RS24880 0.80 -0.4 4,747,711 + pstS LU632_RS24880 0.88 -0.7 4,747,711 + pstS LU632_RS24880 0.88 -0.5 4,747,713 + pstS LU632_RS24880 0.88 -0.2 4,747,713 + pstS LU632_RS24880 0.88 +2.2 4,747,714 - pstS LU632_RS24880 0.88 +1.0 4,747,805 + -1.0 4,747,805 + -2.1 4,747,805 + +0.5 4,747,834 + +0.2 4,747,834 + +0.1 4,747,835 - +1.0 4,748,152 + pstC LU632_RS24885 0.24 -0.6 4,748,153 - pstC LU632_RS24885 0.24 +0.0 4,748,204 - pstC LU632_RS24885 0.30 -0.8 4,748,302 + pstC LU632_RS24885 0.40 +0.0 4,748,343 - pstC LU632_RS24885 0.44 -0.7 4,748,377 + pstC LU632_RS24885 0.48 -0.7 4,748,378 - pstC LU632_RS24885 0.48 +0.0 4,748,659 + pstC LU632_RS24885 0.77 -0.3 4,748,659 + pstC LU632_RS24885 0.77 +0.0 4,748,663 - pstC LU632_RS24885 0.77 -0.6 4,748,720 - pstC LU632_RS24885 0.83 -1.6 4,748,794 + +0.8 4,748,929 - -1.0 4,748,952 + -0.1 4,749,035 + pstA LU632_RS24890 0.18 +0.4 4,749,276 + pstA LU632_RS24890 0.45 +1.0 4,749,276 + pstA LU632_RS24890 0.45 -0.6 4,749,277 - pstA LU632_RS24890 0.45 -0.6 4,749,298 + pstA LU632_RS24890 0.47 -0.6 4,749,440 - pstA LU632_RS24890 0.63 +1.3 4,749,469 - pstA LU632_RS24890 0.67 -0.2 4,749,469 - pstA LU632_RS24890 0.67 -1.6 4,749,726 + +0.0 4,749,727 - +0.3 4,749,763 + +3.0 4,749,773 - -0.8 4,749,791 - +0.0
Or see this region's nucleotide sequence