Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24150

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS24140 and dapF overlap by 4 nucleotidesdapF and LU632_RS24150 overlap by 35 nucleotidesLU632_RS24150 and LU632_RS24155 are separated by 164 nucleotides LU632_RS24140: LU632_RS24140 - DUF484 domain-containing protein, at 4,604,723 to 4,605,427 _RS24140 LU632_RS24145: dapF - diaminopimelate epimerase, at 4,605,424 to 4,606,248 dapF LU632_RS24150: LU632_RS24150 - lipoprotein, at 4,606,214 to 4,606,501 _RS24150 LU632_RS24155: LU632_RS24155 - class I adenylate cyclase, at 4,606,666 to 4,609,221 _RS24155 Position (kb) 4606 4607Strain fitness (log2 ratio) -1 0 1at 4605.428 kb on - strandat 4606.421 kb on - strand, within LU632_RS24150at 4606.421 kb on - strand, within LU632_RS24150at 4606.471 kb on - strand, within LU632_RS24150at 4606.582 kb on + strandat 4606.583 kb on - strandat 4606.584 kb on + strandat 4606.591 kb on + strandat 4606.592 kb on - strandat 4606.619 kb on - strandat 4606.836 kb on - strandat 4606.840 kb on - strandat 4606.949 kb on + strand, within LU632_RS24155at 4606.950 kb on - strand, within LU632_RS24155at 4607.024 kb on - strand, within LU632_RS24155at 4607.024 kb on - strand, within LU632_RS24155

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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4,605,428 - +0.5
4,606,421 - LU632_RS24150 0.72 -1.0
4,606,421 - LU632_RS24150 0.72 -1.0
4,606,471 - LU632_RS24150 0.89 -0.8
4,606,582 + -0.4
4,606,583 - +0.0
4,606,584 + +1.0
4,606,591 + +0.0
4,606,592 - -0.1
4,606,619 - +1.6
4,606,836 - -0.3
4,606,840 - +0.6
4,606,949 + LU632_RS24155 0.11 -0.5
4,606,950 - LU632_RS24155 0.11 -1.0
4,607,024 - LU632_RS24155 0.14 +0.0
4,607,024 - LU632_RS24155 0.14 +0.4

Or see this region's nucleotide sequence