Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metE and metR are separated by 135 nucleotides metR and LU632_RS24040 are separated by 97 nucleotides LU632_RS24040 and LU632_RS24045 are separated by 153 nucleotides
LU632_RS24030: metE - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 4,582,133 to 4,584,403
metE
LU632_RS24035: metR - HTH-type transcriptional regulator MetR, at 4,584,539 to 4,585,462
metR
LU632_RS24040: LU632_RS24040 - DUF1456 family protein, at 4,585,560 to 4,586,045
_RS24040
LU632_RS24045: LU632_RS24045 - hypothetical protein, at 4,586,199 to 4,586,447
_RS24045
Position (kb) 4584
4585
4586 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4583.576 kb on + strand, within metE at 4583.666 kb on - strand, within metE at 4583.676 kb on + strand, within metE at 4583.677 kb on - strand, within metE at 4583.800 kb on + strand, within metE at 4583.904 kb on + strand, within metE at 4583.905 kb on - strand, within metE at 4583.905 kb on - strand, within metE at 4583.939 kb on - strand, within metE at 4583.964 kb on - strand, within metE at 4583.964 kb on - strand, within metE at 4583.964 kb on - strand, within metE at 4584.028 kb on + strand, within metE at 4584.028 kb on + strand, within metE at 4584.028 kb on + strand, within metE at 4584.028 kb on + strand, within metE at 4584.028 kb on + strand, within metE at 4584.029 kb on - strand, within metE at 4584.029 kb on - strand, within metE at 4584.029 kb on - strand, within metE at 4584.030 kb on + strand, within metE at 4584.030 kb on + strand, within metE at 4584.030 kb on + strand, within metE at 4584.030 kb on + strand, within metE at 4584.030 kb on + strand, within metE at 4584.030 kb on + strand, within metE at 4584.031 kb on - strand, within metE at 4584.031 kb on - strand, within metE at 4584.031 kb on - strand, within metE at 4584.031 kb on - strand, within metE at 4584.037 kb on - strand, within metE at 4584.037 kb on - strand, within metE at 4584.056 kb on - strand, within metE at 4584.116 kb on + strand, within metE at 4584.116 kb on + strand, within metE at 4584.117 kb on - strand, within metE at 4584.121 kb on + strand, within metE at 4584.122 kb on - strand, within metE at 4584.146 kb on - strand, within metE at 4584.146 kb on - strand, within metE at 4584.386 kb on - strand at 4584.386 kb on - strand at 4584.392 kb on - strand at 4584.396 kb on - strand at 4584.474 kb on + strand at 4584.488 kb on - strand at 4584.492 kb on + strand at 4584.492 kb on + strand at 4584.493 kb on - strand at 4584.550 kb on + strand at 4584.550 kb on + strand at 4584.550 kb on + strand at 4584.551 kb on - strand at 4584.692 kb on - strand, within metR at 4584.850 kb on + strand, within metR at 4585.001 kb on + strand, within metR at 4585.027 kb on - strand, within metR at 4585.072 kb on + strand, within metR at 4585.113 kb on - strand, within metR at 4585.113 kb on - strand, within metR at 4585.183 kb on - strand, within metR at 4585.203 kb on + strand, within metR at 4585.461 kb on - strand at 4585.502 kb on - strand at 4585.512 kb on - strand at 4585.521 kb on + strand at 4585.521 kb on + strand at 4585.543 kb on + strand at 4585.560 kb on - strand at 4585.565 kb on + strand at 4585.565 kb on + strand at 4585.593 kb on + strand at 4585.593 kb on + strand at 4585.594 kb on - strand at 4585.594 kb on - strand at 4585.727 kb on + strand, within LU632_RS24040 at 4585.727 kb on + strand, within LU632_RS24040 at 4585.727 kb on + strand, within LU632_RS24040 at 4585.727 kb on + strand, within LU632_RS24040 at 4585.728 kb on - strand, within LU632_RS24040 at 4585.728 kb on - strand, within LU632_RS24040 at 4585.728 kb on - strand, within LU632_RS24040 at 4585.728 kb on - strand, within LU632_RS24040 at 4585.805 kb on + strand, within LU632_RS24040 at 4585.806 kb on - strand, within LU632_RS24040 at 4585.883 kb on + strand, within LU632_RS24040 at 4585.883 kb on + strand, within LU632_RS24040 at 4585.904 kb on - strand, within LU632_RS24040 at 4585.927 kb on + strand, within LU632_RS24040 at 4585.978 kb on + strand, within LU632_RS24040 at 4586.009 kb on + strand at 4586.010 kb on - strand at 4586.010 kb on - strand at 4586.011 kb on + strand at 4586.011 kb on + strand at 4586.011 kb on + strand at 4586.012 kb on - strand at 4586.012 kb on - strand at 4586.025 kb on - strand at 4586.175 kb on - strand at 4586.187 kb on + strand at 4586.194 kb on + strand at 4586.194 kb on + strand at 4586.194 kb on + strand at 4586.218 kb on - strand at 4586.227 kb on + strand, within LU632_RS24045 at 4586.227 kb on + strand, within LU632_RS24045 at 4586.227 kb on + strand, within LU632_RS24045 at 4586.228 kb on - strand, within LU632_RS24045 at 4586.299 kb on - strand, within LU632_RS24045 at 4586.370 kb on + strand, within LU632_RS24045 at 4586.370 kb on + strand, within LU632_RS24045 at 4586.371 kb on - strand, within LU632_RS24045 at 4586.371 kb on - strand, within LU632_RS24045 at 4586.405 kb on + strand, within LU632_RS24045
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 4,583,576 + metE LU632_RS24030 0.64 +0.6 4,583,666 - metE LU632_RS24030 0.68 +0.8 4,583,676 + metE LU632_RS24030 0.68 -0.5 4,583,677 - metE LU632_RS24030 0.68 -0.3 4,583,800 + metE LU632_RS24030 0.73 -0.3 4,583,904 + metE LU632_RS24030 0.78 -0.2 4,583,905 - metE LU632_RS24030 0.78 +0.3 4,583,905 - metE LU632_RS24030 0.78 +0.5 4,583,939 - metE LU632_RS24030 0.80 +0.2 4,583,964 - metE LU632_RS24030 0.81 -0.7 4,583,964 - metE LU632_RS24030 0.81 +2.1 4,583,964 - metE LU632_RS24030 0.81 +1.0 4,584,028 + metE LU632_RS24030 0.83 +0.3 4,584,028 + metE LU632_RS24030 0.83 +0.0 4,584,028 + metE LU632_RS24030 0.83 +0.2 4,584,028 + metE LU632_RS24030 0.83 +1.1 4,584,028 + metE LU632_RS24030 0.83 -0.2 4,584,029 - metE LU632_RS24030 0.83 +2.0 4,584,029 - metE LU632_RS24030 0.83 -0.0 4,584,029 - metE LU632_RS24030 0.83 +0.4 4,584,030 + metE LU632_RS24030 0.84 -1.0 4,584,030 + metE LU632_RS24030 0.84 +1.2 4,584,030 + metE LU632_RS24030 0.84 +2.0 4,584,030 + metE LU632_RS24030 0.84 +0.0 4,584,030 + metE LU632_RS24030 0.84 +0.4 4,584,030 + metE LU632_RS24030 0.84 +0.0 4,584,031 - metE LU632_RS24030 0.84 +0.0 4,584,031 - metE LU632_RS24030 0.84 +0.0 4,584,031 - metE LU632_RS24030 0.84 +0.0 4,584,031 - metE LU632_RS24030 0.84 +0.7 4,584,037 - metE LU632_RS24030 0.84 +0.2 4,584,037 - metE LU632_RS24030 0.84 +1.8 4,584,056 - metE LU632_RS24030 0.85 -0.6 4,584,116 + metE LU632_RS24030 0.87 +0.0 4,584,116 + metE LU632_RS24030 0.87 +0.9 4,584,117 - metE LU632_RS24030 0.87 +0.8 4,584,121 + metE LU632_RS24030 0.88 +0.0 4,584,122 - metE LU632_RS24030 0.88 -0.5 4,584,146 - metE LU632_RS24030 0.89 -0.1 4,584,146 - metE LU632_RS24030 0.89 +0.2 4,584,386 - -0.7 4,584,386 - +0.3 4,584,392 - -1.4 4,584,396 - -0.3 4,584,474 + -0.4 4,584,488 - +0.0 4,584,492 + +1.0 4,584,492 + +2.0 4,584,493 - +0.6 4,584,550 + +1.0 4,584,550 + -0.5 4,584,550 + -1.8 4,584,551 - +0.0 4,584,692 - metR LU632_RS24035 0.17 +0.4 4,584,850 + metR LU632_RS24035 0.34 -1.9 4,585,001 + metR LU632_RS24035 0.50 -1.3 4,585,027 - metR LU632_RS24035 0.53 +1.3 4,585,072 + metR LU632_RS24035 0.58 +0.0 4,585,113 - metR LU632_RS24035 0.62 -1.0 4,585,113 - metR LU632_RS24035 0.62 -0.7 4,585,183 - metR LU632_RS24035 0.70 +0.0 4,585,203 + metR LU632_RS24035 0.72 -0.1 4,585,461 - +0.0 4,585,502 - +0.2 4,585,512 - +0.0 4,585,521 + +0.6 4,585,521 + +0.0 4,585,543 + +0.6 4,585,560 - +2.0 4,585,565 + -0.1 4,585,565 + +1.0 4,585,593 + -0.7 4,585,593 + +0.2 4,585,594 - -0.3 4,585,594 - +1.0 4,585,727 + LU632_RS24040 0.34 +1.0 4,585,727 + LU632_RS24040 0.34 +1.6 4,585,727 + LU632_RS24040 0.34 +0.1 4,585,727 + LU632_RS24040 0.34 -0.9 4,585,728 - LU632_RS24040 0.35 +0.6 4,585,728 - LU632_RS24040 0.35 +0.6 4,585,728 - LU632_RS24040 0.35 +1.3 4,585,728 - LU632_RS24040 0.35 -1.0 4,585,805 + LU632_RS24040 0.50 +0.0 4,585,806 - LU632_RS24040 0.51 +0.4 4,585,883 + LU632_RS24040 0.66 -1.1 4,585,883 + LU632_RS24040 0.66 -1.0 4,585,904 - LU632_RS24040 0.71 +0.6 4,585,927 + LU632_RS24040 0.76 +0.3 4,585,978 + LU632_RS24040 0.86 -0.1 4,586,009 + -0.6 4,586,010 - -0.6 4,586,010 - +2.3 4,586,011 + -0.4 4,586,011 + +0.0 4,586,011 + +0.2 4,586,012 - -0.2 4,586,012 - -0.1 4,586,025 - +1.1 4,586,175 - +1.5 4,586,187 + +0.2 4,586,194 + +0.1 4,586,194 + -1.3 4,586,194 + -0.2 4,586,218 - -1.4 4,586,227 + LU632_RS24045 0.11 -0.3 4,586,227 + LU632_RS24045 0.11 -0.4 4,586,227 + LU632_RS24045 0.11 +0.4 4,586,228 - LU632_RS24045 0.12 +0.2 4,586,299 - LU632_RS24045 0.40 +1.0 4,586,370 + LU632_RS24045 0.69 -0.5 4,586,370 + LU632_RS24045 0.69 +0.2 4,586,371 - LU632_RS24045 0.69 +0.0 4,586,371 - LU632_RS24045 0.69 -1.2 4,586,405 + LU632_RS24045 0.83 -0.5
Or see this region's nucleotide sequence