Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cpxP and cpxR are separated by 151 nucleotides cpxR and cpxA overlap by 4 nucleotides cpxA and trmL are separated by 42 nucleotides trmL and cysE overlap by 4 nucleotides
LU632_RS21850: cpxP - cell-envelope stress modulator CpxP, at 4,174,742 to 4,175,242
cpxP
LU632_RS21855: cpxR - envelope stress response regulator transcription factor CpxR, at 4,175,394 to 4,176,089
cpxR
LU632_RS21860: cpxA - envelope stress sensor histidine kinase CpxA, at 4,176,086 to 4,177,462
cpxA
LU632_RS21865: trmL - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 4,177,505 to 4,177,981
trmL
LU632_RS21870: cysE - serine O-acetyltransferase, at 4,177,978 to 4,178,799
cysE
Position (kb) 4176
4177
4178 Strain fitness (log2 ratio) -2
-1
0
1 at 4175.234 kb on + strand at 4175.235 kb on - strand at 4175.235 kb on - strand at 4175.337 kb on - strand at 4175.337 kb on - strand at 4175.337 kb on - strand at 4175.476 kb on + strand, within cpxR at 4175.476 kb on + strand, within cpxR at 4175.476 kb on + strand, within cpxR at 4175.619 kb on - strand, within cpxR at 4175.619 kb on - strand, within cpxR at 4175.619 kb on - strand, within cpxR at 4175.619 kb on - strand, within cpxR at 4175.682 kb on + strand, within cpxR at 4175.738 kb on - strand, within cpxR at 4175.806 kb on + strand, within cpxR at 4175.807 kb on - strand, within cpxR at 4175.807 kb on - strand, within cpxR at 4175.887 kb on - strand, within cpxR at 4175.917 kb on + strand, within cpxR at 4175.918 kb on - strand, within cpxR at 4175.918 kb on - strand, within cpxR at 4175.990 kb on + strand, within cpxR at 4175.990 kb on + strand, within cpxR at 4175.990 kb on + strand, within cpxR at 4175.990 kb on + strand, within cpxR at 4175.990 kb on + strand, within cpxR at 4175.990 kb on + strand, within cpxR at 4175.990 kb on + strand, within cpxR at 4175.991 kb on - strand, within cpxR at 4175.991 kb on - strand, within cpxR at 4175.991 kb on - strand, within cpxR at 4175.991 kb on - strand, within cpxR at 4175.992 kb on + strand, within cpxR at 4176.070 kb on + strand at 4176.159 kb on + strand at 4176.160 kb on - strand at 4176.165 kb on + strand at 4176.165 kb on + strand at 4176.166 kb on - strand at 4176.226 kb on - strand, within cpxA at 4176.313 kb on + strand, within cpxA at 4176.314 kb on - strand, within cpxA at 4176.453 kb on - strand, within cpxA at 4176.502 kb on + strand, within cpxA at 4176.507 kb on - strand, within cpxA at 4176.515 kb on + strand, within cpxA at 4176.553 kb on + strand, within cpxA at 4176.585 kb on + strand, within cpxA at 4176.604 kb on - strand, within cpxA at 4176.604 kb on - strand, within cpxA at 4176.604 kb on - strand, within cpxA at 4176.607 kb on + strand, within cpxA at 4176.834 kb on + strand, within cpxA at 4176.907 kb on - strand, within cpxA at 4176.907 kb on - strand, within cpxA at 4176.907 kb on - strand, within cpxA at 4176.915 kb on + strand, within cpxA at 4176.915 kb on + strand, within cpxA at 4176.916 kb on - strand, within cpxA at 4176.982 kb on + strand, within cpxA at 4176.982 kb on + strand, within cpxA at 4176.983 kb on - strand, within cpxA at 4176.983 kb on - strand, within cpxA at 4176.983 kb on - strand, within cpxA at 4177.084 kb on + strand, within cpxA at 4177.085 kb on - strand, within cpxA at 4177.085 kb on - strand, within cpxA at 4177.086 kb on + strand, within cpxA at 4177.086 kb on + strand, within cpxA at 4177.087 kb on - strand, within cpxA at 4177.116 kb on - strand, within cpxA at 4177.116 kb on - strand, within cpxA at 4177.225 kb on + strand, within cpxA at 4177.470 kb on + strand at 4177.471 kb on - strand at 4177.471 kb on - strand at 4177.487 kb on + strand at 4177.488 kb on - strand at 4177.555 kb on + strand, within trmL at 4177.556 kb on - strand, within trmL at 4177.556 kb on - strand, within trmL at 4177.556 kb on - strand, within trmL at 4177.573 kb on + strand, within trmL at 4177.577 kb on - strand, within trmL at 4177.577 kb on - strand, within trmL at 4177.597 kb on + strand, within trmL at 4177.598 kb on - strand, within trmL at 4177.598 kb on - strand, within trmL at 4177.598 kb on - strand, within trmL at 4177.599 kb on + strand, within trmL at 4177.600 kb on - strand, within trmL at 4177.600 kb on - strand, within trmL at 4177.628 kb on - strand, within trmL at 4177.655 kb on + strand, within trmL at 4177.692 kb on - strand, within trmL at 4177.692 kb on - strand, within trmL at 4177.874 kb on - strand, within trmL at 4177.874 kb on - strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.929 kb on - strand, within trmL at 4177.929 kb on - strand, within trmL at 4177.952 kb on + strand at 4177.969 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 4,175,234 + -0.1 4,175,235 - +1.0 4,175,235 - -1.0 4,175,337 - +0.4 4,175,337 - -0.5 4,175,337 - +0.7 4,175,476 + cpxR LU632_RS21855 0.12 +0.6 4,175,476 + cpxR LU632_RS21855 0.12 +0.2 4,175,476 + cpxR LU632_RS21855 0.12 +0.0 4,175,619 - cpxR LU632_RS21855 0.32 -0.5 4,175,619 - cpxR LU632_RS21855 0.32 +1.0 4,175,619 - cpxR LU632_RS21855 0.32 -0.6 4,175,619 - cpxR LU632_RS21855 0.32 +1.0 4,175,682 + cpxR LU632_RS21855 0.41 -1.8 4,175,738 - cpxR LU632_RS21855 0.49 -0.1 4,175,806 + cpxR LU632_RS21855 0.59 -1.3 4,175,807 - cpxR LU632_RS21855 0.59 +0.5 4,175,807 - cpxR LU632_RS21855 0.59 -0.2 4,175,887 - cpxR LU632_RS21855 0.71 +0.8 4,175,917 + cpxR LU632_RS21855 0.75 -1.0 4,175,918 - cpxR LU632_RS21855 0.75 -1.3 4,175,918 - cpxR LU632_RS21855 0.75 +1.5 4,175,990 + cpxR LU632_RS21855 0.86 -0.3 4,175,990 + cpxR LU632_RS21855 0.86 +0.0 4,175,990 + cpxR LU632_RS21855 0.86 +1.0 4,175,990 + cpxR LU632_RS21855 0.86 +0.5 4,175,990 + cpxR LU632_RS21855 0.86 +0.0 4,175,990 + cpxR LU632_RS21855 0.86 -1.0 4,175,990 + cpxR LU632_RS21855 0.86 -0.8 4,175,991 - cpxR LU632_RS21855 0.86 -0.1 4,175,991 - cpxR LU632_RS21855 0.86 -0.2 4,175,991 - cpxR LU632_RS21855 0.86 -1.0 4,175,991 - cpxR LU632_RS21855 0.86 +1.3 4,175,992 + cpxR LU632_RS21855 0.86 +0.0 4,176,070 + +1.0 4,176,159 + -0.3 4,176,160 - +0.0 4,176,165 + -0.4 4,176,165 + -1.3 4,176,166 - +0.0 4,176,226 - cpxA LU632_RS21860 0.10 +1.0 4,176,313 + cpxA LU632_RS21860 0.16 -1.6 4,176,314 - cpxA LU632_RS21860 0.17 -0.7 4,176,453 - cpxA LU632_RS21860 0.27 +0.0 4,176,502 + cpxA LU632_RS21860 0.30 +0.0 4,176,507 - cpxA LU632_RS21860 0.31 -0.3 4,176,515 + cpxA LU632_RS21860 0.31 +0.1 4,176,553 + cpxA LU632_RS21860 0.34 -0.2 4,176,585 + cpxA LU632_RS21860 0.36 +0.0 4,176,604 - cpxA LU632_RS21860 0.38 +0.0 4,176,604 - cpxA LU632_RS21860 0.38 -0.3 4,176,604 - cpxA LU632_RS21860 0.38 -2.0 4,176,607 + cpxA LU632_RS21860 0.38 +0.0 4,176,834 + cpxA LU632_RS21860 0.54 -1.4 4,176,907 - cpxA LU632_RS21860 0.60 -1.6 4,176,907 - cpxA LU632_RS21860 0.60 -1.6 4,176,907 - cpxA LU632_RS21860 0.60 -2.0 4,176,915 + cpxA LU632_RS21860 0.60 +0.0 4,176,915 + cpxA LU632_RS21860 0.60 -0.4 4,176,916 - cpxA LU632_RS21860 0.60 -1.6 4,176,982 + cpxA LU632_RS21860 0.65 -2.3 4,176,982 + cpxA LU632_RS21860 0.65 -0.2 4,176,983 - cpxA LU632_RS21860 0.65 -1.6 4,176,983 - cpxA LU632_RS21860 0.65 -1.2 4,176,983 - cpxA LU632_RS21860 0.65 -1.4 4,177,084 + cpxA LU632_RS21860 0.72 +0.0 4,177,085 - cpxA LU632_RS21860 0.73 -0.1 4,177,085 - cpxA LU632_RS21860 0.73 +0.0 4,177,086 + cpxA LU632_RS21860 0.73 +0.0 4,177,086 + cpxA LU632_RS21860 0.73 -2.6 4,177,087 - cpxA LU632_RS21860 0.73 -2.0 4,177,116 - cpxA LU632_RS21860 0.75 +0.4 4,177,116 - cpxA LU632_RS21860 0.75 +0.0 4,177,225 + cpxA LU632_RS21860 0.83 +0.8 4,177,470 + +1.0 4,177,471 - +1.4 4,177,471 - +0.0 4,177,487 + -1.0 4,177,488 - +0.1 4,177,555 + trmL LU632_RS21865 0.10 +0.2 4,177,556 - trmL LU632_RS21865 0.11 -0.3 4,177,556 - trmL LU632_RS21865 0.11 +0.0 4,177,556 - trmL LU632_RS21865 0.11 -0.7 4,177,573 + trmL LU632_RS21865 0.14 -0.1 4,177,577 - trmL LU632_RS21865 0.15 -0.7 4,177,577 - trmL LU632_RS21865 0.15 +1.6 4,177,597 + trmL LU632_RS21865 0.19 +0.0 4,177,598 - trmL LU632_RS21865 0.19 -2.6 4,177,598 - trmL LU632_RS21865 0.19 +0.1 4,177,598 - trmL LU632_RS21865 0.19 +0.0 4,177,599 + trmL LU632_RS21865 0.20 +0.0 4,177,600 - trmL LU632_RS21865 0.20 -0.3 4,177,600 - trmL LU632_RS21865 0.20 -0.0 4,177,628 - trmL LU632_RS21865 0.26 +0.7 4,177,655 + trmL LU632_RS21865 0.31 -0.5 4,177,692 - trmL LU632_RS21865 0.39 -1.0 4,177,692 - trmL LU632_RS21865 0.39 -0.1 4,177,874 - trmL LU632_RS21865 0.77 -2.0 4,177,874 - trmL LU632_RS21865 0.77 +1.0 4,177,928 + trmL LU632_RS21865 0.89 +0.0 4,177,928 + trmL LU632_RS21865 0.89 +0.2 4,177,928 + trmL LU632_RS21865 0.89 -1.3 4,177,929 - trmL LU632_RS21865 0.89 +0.0 4,177,929 - trmL LU632_RS21865 0.89 +0.0 4,177,952 + +1.6 4,177,969 + +0.0
Or see this region's nucleotide sequence