Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hutW and hutX overlap by 20 nucleotides hutX and LU632_RS18445 overlap by 1 nucleotides LU632_RS18445 and LU632_RS18450 are separated by 48 nucleotides
LU632_RS18435: hutW - heme anaerobic degradation radical SAM methyltransferase ChuW/HutW, at 3,484,634 to 3,485,944
hutW
LU632_RS18440: hutX - heme utilization cystosolic carrier protein HutX, at 3,485,925 to 3,486,419
hutX
LU632_RS18445: LU632_RS18445 - NAD(P)H-binding protein, at 3,486,419 to 3,487,042
_RS18445
LU632_RS18450: LU632_RS18450 - YajQ family cyclic di-GMP-binding protein, at 3,487,091 to 3,487,582
_RS18450
Position (kb) 3485
3486
3487 Strain fitness (log2 ratio) -1
0
1
2
3 at 3484.953 kb on - strand, within hutW at 3485.070 kb on + strand, within hutW at 3485.075 kb on - strand, within hutW at 3485.075 kb on - strand, within hutW at 3485.092 kb on + strand, within hutW at 3485.139 kb on + strand, within hutW at 3485.140 kb on - strand, within hutW at 3485.158 kb on + strand, within hutW at 3485.164 kb on + strand, within hutW at 3485.164 kb on + strand, within hutW at 3485.165 kb on - strand, within hutW at 3485.300 kb on + strand, within hutW at 3485.300 kb on + strand, within hutW at 3485.301 kb on - strand, within hutW at 3485.345 kb on + strand, within hutW at 3485.418 kb on + strand, within hutW at 3485.418 kb on + strand, within hutW at 3485.521 kb on + strand, within hutW at 3485.521 kb on + strand, within hutW at 3485.529 kb on - strand, within hutW at 3485.608 kb on + strand, within hutW at 3485.608 kb on + strand, within hutW at 3485.608 kb on + strand, within hutW at 3485.608 kb on + strand, within hutW at 3485.609 kb on - strand, within hutW at 3485.609 kb on - strand, within hutW at 3485.609 kb on - strand, within hutW at 3485.609 kb on - strand, within hutW at 3485.609 kb on - strand, within hutW at 3485.609 kb on - strand, within hutW at 3485.609 kb on - strand, within hutW at 3485.647 kb on - strand, within hutW at 3485.784 kb on - strand, within hutW at 3485.784 kb on - strand, within hutW at 3485.830 kb on + strand at 3485.854 kb on + strand at 3485.924 kb on + strand at 3486.007 kb on + strand, within hutX at 3486.314 kb on + strand, within hutX at 3486.315 kb on - strand, within hutX at 3486.413 kb on + strand at 3486.417 kb on + strand at 3486.417 kb on + strand at 3486.436 kb on - strand at 3486.565 kb on + strand, within LU632_RS18445 at 3486.565 kb on + strand, within LU632_RS18445 at 3486.566 kb on - strand, within LU632_RS18445 at 3486.566 kb on - strand, within LU632_RS18445 at 3486.566 kb on - strand, within LU632_RS18445 at 3486.568 kb on - strand, within LU632_RS18445 at 3486.668 kb on + strand, within LU632_RS18445 at 3486.668 kb on + strand, within LU632_RS18445 at 3486.882 kb on + strand, within LU632_RS18445 at 3486.883 kb on - strand, within LU632_RS18445 at 3486.923 kb on - strand, within LU632_RS18445 at 3487.007 kb on + strand at 3487.040 kb on + strand at 3487.043 kb on + strand at 3487.044 kb on - strand at 3487.044 kb on - strand at 3487.315 kb on + strand, within LU632_RS18450
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 3,484,953 - hutW LU632_RS18435 0.24 -1.0 3,485,070 + hutW LU632_RS18435 0.33 -0.2 3,485,075 - hutW LU632_RS18435 0.34 +0.5 3,485,075 - hutW LU632_RS18435 0.34 +1.0 3,485,092 + hutW LU632_RS18435 0.35 -0.1 3,485,139 + hutW LU632_RS18435 0.39 +0.6 3,485,140 - hutW LU632_RS18435 0.39 -0.1 3,485,158 + hutW LU632_RS18435 0.40 +0.6 3,485,164 + hutW LU632_RS18435 0.40 +1.6 3,485,164 + hutW LU632_RS18435 0.40 +0.3 3,485,165 - hutW LU632_RS18435 0.41 +0.4 3,485,300 + hutW LU632_RS18435 0.51 +0.8 3,485,300 + hutW LU632_RS18435 0.51 -1.6 3,485,301 - hutW LU632_RS18435 0.51 +0.2 3,485,345 + hutW LU632_RS18435 0.54 -0.0 3,485,418 + hutW LU632_RS18435 0.60 +0.6 3,485,418 + hutW LU632_RS18435 0.60 +1.2 3,485,521 + hutW LU632_RS18435 0.68 +0.7 3,485,521 + hutW LU632_RS18435 0.68 -0.0 3,485,529 - hutW LU632_RS18435 0.68 -0.4 3,485,608 + hutW LU632_RS18435 0.74 -0.2 3,485,608 + hutW LU632_RS18435 0.74 +0.8 3,485,608 + hutW LU632_RS18435 0.74 -1.6 3,485,608 + hutW LU632_RS18435 0.74 +0.2 3,485,609 - hutW LU632_RS18435 0.74 -1.0 3,485,609 - hutW LU632_RS18435 0.74 -1.6 3,485,609 - hutW LU632_RS18435 0.74 +1.0 3,485,609 - hutW LU632_RS18435 0.74 -0.2 3,485,609 - hutW LU632_RS18435 0.74 -0.4 3,485,609 - hutW LU632_RS18435 0.74 -0.0 3,485,609 - hutW LU632_RS18435 0.74 -1.0 3,485,647 - hutW LU632_RS18435 0.77 +1.4 3,485,784 - hutW LU632_RS18435 0.88 -1.3 3,485,784 - hutW LU632_RS18435 0.88 +3.0 3,485,830 + -0.0 3,485,854 + +0.1 3,485,924 + -0.4 3,486,007 + hutX LU632_RS18440 0.17 -0.9 3,486,314 + hutX LU632_RS18440 0.79 -0.2 3,486,315 - hutX LU632_RS18440 0.79 -1.4 3,486,413 + +0.1 3,486,417 + -0.0 3,486,417 + -0.0 3,486,436 - -1.0 3,486,565 + LU632_RS18445 0.23 +0.1 3,486,565 + LU632_RS18445 0.23 +1.1 3,486,566 - LU632_RS18445 0.24 +0.2 3,486,566 - LU632_RS18445 0.24 -0.2 3,486,566 - LU632_RS18445 0.24 +0.6 3,486,568 - LU632_RS18445 0.24 +1.0 3,486,668 + LU632_RS18445 0.40 +0.7 3,486,668 + LU632_RS18445 0.40 -0.0 3,486,882 + LU632_RS18445 0.74 -0.3 3,486,883 - LU632_RS18445 0.74 +0.6 3,486,923 - LU632_RS18445 0.81 +0.7 3,487,007 + -0.0 3,487,040 + +0.3 3,487,043 + -0.6 3,487,044 - -1.0 3,487,044 - -1.1 3,487,315 + LU632_RS18450 0.46 -0.4
Or see this region's nucleotide sequence