Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS16525 and LU632_RS16530 are separated by 149 nucleotides LU632_RS16530 and LU632_RS16535 are separated by 116 nucleotides LU632_RS16535 and LU632_RS16540 are separated by 7 nucleotides LU632_RS16540 and LU632_RS16545 overlap by 62 nucleotides LU632_RS16545 and LU632_RS16550 overlap by 1 nucleotides LU632_RS16550 and LU632_RS16555 are separated by 61 nucleotides LU632_RS16555 and LU632_RS16560 are separated by 17 nucleotides
LU632_RS16525: LU632_RS16525 - iron-containing alcohol dehydrogenase, at 3,131,614 to 3,132,753
_RS16525
LU632_RS16530: LU632_RS16530 - short-chain dehydrogenase/reductase SDR, at 3,132,903 to 3,133,058
_RS16530
LU632_RS16535: LU632_RS16535 - hypothetical protein, at 3,133,175 to 3,133,393
_RS16535
LU632_RS16540: LU632_RS16540 - hypothetical protein, at 3,133,401 to 3,133,682
_RS16540
LU632_RS16545: LU632_RS16545 - hypothetical protein, at 3,133,621 to 3,134,190
_RS16545
LU632_RS16550: LU632_RS16550 - hypothetical protein, at 3,134,190 to 3,134,357
_RS16550
LU632_RS16555: LU632_RS16555 - hypothetical protein, at 3,134,419 to 3,134,613
_RS16555
LU632_RS16560: LU632_RS16560 - hypothetical protein, at 3,134,631 to 3,134,978
_RS16560
Position (kb) 3133
3134 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3132.485 kb on + strand, within LU632_RS16525 at 3132.701 kb on - strand at 3132.723 kb on + strand at 3132.723 kb on + strand at 3132.723 kb on + strand at 3132.724 kb on - strand at 3132.759 kb on + strand at 3132.785 kb on + strand at 3132.804 kb on + strand at 3132.978 kb on + strand, within LU632_RS16530 at 3132.978 kb on + strand, within LU632_RS16530 at 3132.979 kb on - strand, within LU632_RS16530 at 3132.984 kb on - strand, within LU632_RS16530 at 3133.042 kb on + strand, within LU632_RS16530 at 3133.042 kb on + strand, within LU632_RS16530 at 3133.042 kb on + strand, within LU632_RS16530 at 3133.042 kb on + strand, within LU632_RS16530 at 3133.042 kb on + strand, within LU632_RS16530 at 3133.043 kb on - strand at 3133.043 kb on - strand at 3133.043 kb on - strand at 3133.046 kb on + strand at 3133.046 kb on + strand at 3133.046 kb on + strand at 3133.047 kb on - strand at 3133.057 kb on - strand at 3133.126 kb on + strand at 3133.157 kb on + strand at 3133.187 kb on + strand at 3133.188 kb on - strand at 3133.192 kb on + strand at 3133.196 kb on + strand at 3133.199 kb on + strand, within LU632_RS16535 at 3133.215 kb on + strand, within LU632_RS16535 at 3133.216 kb on - strand, within LU632_RS16535 at 3133.263 kb on + strand, within LU632_RS16535 at 3133.263 kb on + strand, within LU632_RS16535 at 3133.263 kb on + strand, within LU632_RS16535 at 3133.366 kb on - strand, within LU632_RS16535 at 3133.366 kb on - strand, within LU632_RS16535 at 3133.366 kb on - strand, within LU632_RS16535 at 3133.366 kb on - strand, within LU632_RS16535 at 3133.499 kb on + strand, within LU632_RS16540 at 3133.499 kb on + strand, within LU632_RS16540 at 3133.500 kb on - strand, within LU632_RS16540 at 3133.648 kb on + strand at 3133.648 kb on + strand at 3133.928 kb on + strand, within LU632_RS16545 at 3134.035 kb on + strand, within LU632_RS16545 at 3134.035 kb on + strand, within LU632_RS16545 at 3134.035 kb on + strand, within LU632_RS16545 at 3134.035 kb on + strand, within LU632_RS16545 at 3134.036 kb on - strand, within LU632_RS16545 at 3134.323 kb on - strand, within LU632_RS16550 at 3134.326 kb on - strand, within LU632_RS16550 at 3134.461 kb on + strand, within LU632_RS16555 at 3134.473 kb on - strand, within LU632_RS16555 at 3134.513 kb on + strand, within LU632_RS16555
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 3,132,485 + LU632_RS16525 0.76 -0.0 3,132,701 - +0.5 3,132,723 + +2.0 3,132,723 + +0.6 3,132,723 + +0.2 3,132,724 - +0.0 3,132,759 + -0.5 3,132,785 + -0.4 3,132,804 + -1.4 3,132,978 + LU632_RS16530 0.48 +0.3 3,132,978 + LU632_RS16530 0.48 +0.0 3,132,979 - LU632_RS16530 0.49 -1.6 3,132,984 - LU632_RS16530 0.52 +1.0 3,133,042 + LU632_RS16530 0.89 +0.2 3,133,042 + LU632_RS16530 0.89 +0.1 3,133,042 + LU632_RS16530 0.89 +0.0 3,133,042 + LU632_RS16530 0.89 +0.5 3,133,042 + LU632_RS16530 0.89 -0.2 3,133,043 - +0.2 3,133,043 - -0.2 3,133,043 - -1.4 3,133,046 + -0.2 3,133,046 + +0.6 3,133,046 + -0.2 3,133,047 - -0.0 3,133,057 - -0.6 3,133,126 + +1.2 3,133,157 + -0.3 3,133,187 + +0.6 3,133,188 - +0.5 3,133,192 + -0.3 3,133,196 + -0.3 3,133,199 + LU632_RS16535 0.11 +0.6 3,133,215 + LU632_RS16535 0.18 -0.2 3,133,216 - LU632_RS16535 0.19 -0.4 3,133,263 + LU632_RS16535 0.40 -1.4 3,133,263 + LU632_RS16535 0.40 -0.5 3,133,263 + LU632_RS16535 0.40 -2.0 3,133,366 - LU632_RS16535 0.87 -2.1 3,133,366 - LU632_RS16535 0.87 -1.0 3,133,366 - LU632_RS16535 0.87 -1.0 3,133,366 - LU632_RS16535 0.87 +0.2 3,133,499 + LU632_RS16540 0.35 +0.9 3,133,499 + LU632_RS16540 0.35 +1.6 3,133,500 - LU632_RS16540 0.35 +0.9 3,133,648 + +0.0 3,133,648 + +0.7 3,133,928 + LU632_RS16545 0.54 -1.7 3,134,035 + LU632_RS16545 0.73 +0.0 3,134,035 + LU632_RS16545 0.73 +0.3 3,134,035 + LU632_RS16545 0.73 -1.6 3,134,035 + LU632_RS16545 0.73 +0.0 3,134,036 - LU632_RS16545 0.73 -1.0 3,134,323 - LU632_RS16550 0.79 +0.8 3,134,326 - LU632_RS16550 0.81 +0.8 3,134,461 + LU632_RS16555 0.22 -0.6 3,134,473 - LU632_RS16555 0.28 -1.2 3,134,513 + LU632_RS16555 0.48 +0.0
Or see this region's nucleotide sequence