Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS16100 and sdhA are separated by 18 nucleotides sdhA and sdhD are separated by 1 nucleotides sdhD and sdhC overlap by 7 nucleotides
LU632_RS16100: LU632_RS16100 - succinate dehydrogenase iron-sulfur subunit, at 3,043,959 to 3,044,675
_RS16100
LU632_RS16105: sdhA - succinate dehydrogenase flavoprotein subunit, at 3,044,694 to 3,046,460
sdhA
LU632_RS16110: sdhD - succinate dehydrogenase membrane anchor subunit, at 3,046,462 to 3,046,809
sdhD
LU632_RS16115: sdhC - succinate dehydrogenase cytochrome b556 subunit, at 3,046,803 to 3,047,192
sdhC
Position (kb)
3044
3045
3046
3047 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3043.753 kb on + strand at 3043.754 kb on - strand at 3043.775 kb on - strand at 3043.775 kb on - strand at 3043.775 kb on - strand at 3043.825 kb on - strand at 3043.890 kb on - strand at 3043.921 kb on - strand at 3043.921 kb on - strand at 3043.974 kb on + strand at 3043.989 kb on - strand at 3044.031 kb on + strand, within LU632_RS16100 at 3044.031 kb on + strand, within LU632_RS16100 at 3044.031 kb on + strand, within LU632_RS16100 at 3044.032 kb on - strand, within LU632_RS16100 at 3044.229 kb on - strand, within LU632_RS16100 at 3044.236 kb on + strand, within LU632_RS16100 at 3044.236 kb on + strand, within LU632_RS16100 at 3044.237 kb on - strand, within LU632_RS16100 at 3044.238 kb on + strand, within LU632_RS16100 at 3044.478 kb on - strand, within LU632_RS16100 at 3044.634 kb on + strand at 3044.696 kb on - strand at 3044.698 kb on + strand at 3044.699 kb on - strand at 3044.736 kb on - strand at 3044.749 kb on - strand at 3044.931 kb on - strand, within sdhA at 3045.232 kb on - strand, within sdhA at 3045.395 kb on + strand, within sdhA at 3045.395 kb on + strand, within sdhA at 3045.395 kb on + strand, within sdhA at 3045.396 kb on - strand, within sdhA at 3045.396 kb on - strand, within sdhA at 3045.396 kb on - strand, within sdhA at 3045.397 kb on + strand, within sdhA at 3045.398 kb on - strand, within sdhA at 3045.398 kb on - strand, within sdhA at 3045.398 kb on - strand, within sdhA at 3045.398 kb on - strand, within sdhA at 3045.398 kb on - strand, within sdhA at 3045.673 kb on + strand, within sdhA at 3045.768 kb on + strand, within sdhA at 3045.813 kb on - strand, within sdhA at 3045.881 kb on + strand, within sdhA at 3046.013 kb on - strand, within sdhA at 3046.118 kb on - strand, within sdhA at 3046.118 kb on - strand, within sdhA at 3046.118 kb on - strand, within sdhA at 3046.158 kb on - strand, within sdhA at 3046.158 kb on - strand, within sdhA at 3046.194 kb on - strand, within sdhA at 3046.194 kb on - strand, within sdhA at 3046.199 kb on + strand, within sdhA at 3046.199 kb on + strand, within sdhA at 3046.200 kb on - strand, within sdhA at 3046.200 kb on - strand, within sdhA at 3046.200 kb on - strand, within sdhA at 3046.201 kb on + strand, within sdhA at 3046.248 kb on - strand, within sdhA at 3046.252 kb on + strand, within sdhA at 3046.252 kb on + strand, within sdhA at 3046.482 kb on + strand at 3046.483 kb on - strand at 3046.483 kb on - strand at 3046.505 kb on - strand, within sdhD at 3046.563 kb on - strand, within sdhD at 3046.574 kb on - strand, within sdhD at 3046.574 kb on - strand, within sdhD at 3046.634 kb on - strand, within sdhD at 3046.638 kb on + strand, within sdhD at 3046.672 kb on - strand, within sdhD at 3046.681 kb on - strand, within sdhD at 3046.715 kb on + strand, within sdhD at 3046.715 kb on + strand, within sdhD at 3046.716 kb on - strand, within sdhD at 3046.724 kb on + strand, within sdhD at 3046.724 kb on + strand, within sdhD at 3046.724 kb on + strand, within sdhD at 3046.725 kb on - strand, within sdhD at 3046.726 kb on + strand, within sdhD at 3046.726 kb on + strand, within sdhD at 3046.726 kb on + strand, within sdhD at 3046.727 kb on - strand, within sdhD at 3046.805 kb on - strand at 3046.927 kb on - strand, within sdhC at 3046.982 kb on + strand, within sdhC at 3046.988 kb on + strand, within sdhC at 3046.989 kb on - strand, within sdhC at 3047.064 kb on + strand, within sdhC at 3047.064 kb on + strand, within sdhC at 3047.065 kb on - strand, within sdhC at 3047.065 kb on - strand, within sdhC at 3047.065 kb on - strand, within sdhC at 3047.098 kb on - strand, within sdhC at 3047.098 kb on - strand, within sdhC at 3047.247 kb on - strand at 3047.248 kb on + strand at 3047.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 3,043,753 + +1.0 3,043,754 - -1.0 3,043,775 - +0.1 3,043,775 - -1.0 3,043,775 - -0.6 3,043,825 - +0.1 3,043,890 - -0.3 3,043,921 - -0.6 3,043,921 - +0.0 3,043,974 + -1.0 3,043,989 - -1.1 3,044,031 + LU632_RS16100 0.10 -1.6 3,044,031 + LU632_RS16100 0.10 +0.0 3,044,031 + LU632_RS16100 0.10 -1.0 3,044,032 - LU632_RS16100 0.10 -1.6 3,044,229 - LU632_RS16100 0.38 -1.1 3,044,236 + LU632_RS16100 0.39 +0.0 3,044,236 + LU632_RS16100 0.39 +0.0 3,044,237 - LU632_RS16100 0.39 -1.6 3,044,238 + LU632_RS16100 0.39 +0.6 3,044,478 - LU632_RS16100 0.72 -0.4 3,044,634 + -0.9 3,044,696 - +0.0 3,044,698 + -2.0 3,044,699 - +1.8 3,044,736 - -1.2 3,044,749 - -1.5 3,044,931 - sdhA LU632_RS16105 0.13 -2.3 3,045,232 - sdhA LU632_RS16105 0.30 -0.6 3,045,395 + sdhA LU632_RS16105 0.40 -0.6 3,045,395 + sdhA LU632_RS16105 0.40 +0.0 3,045,395 + sdhA LU632_RS16105 0.40 -1.6 3,045,396 - sdhA LU632_RS16105 0.40 +0.3 3,045,396 - sdhA LU632_RS16105 0.40 -1.6 3,045,396 - sdhA LU632_RS16105 0.40 -1.8 3,045,397 + sdhA LU632_RS16105 0.40 +0.0 3,045,398 - sdhA LU632_RS16105 0.40 -0.2 3,045,398 - sdhA LU632_RS16105 0.40 -1.0 3,045,398 - sdhA LU632_RS16105 0.40 -2.8 3,045,398 - sdhA LU632_RS16105 0.40 -1.6 3,045,398 - sdhA LU632_RS16105 0.40 +0.0 3,045,673 + sdhA LU632_RS16105 0.55 -1.3 3,045,768 + sdhA LU632_RS16105 0.61 -1.0 3,045,813 - sdhA LU632_RS16105 0.63 +0.6 3,045,881 + sdhA LU632_RS16105 0.67 +0.0 3,046,013 - sdhA LU632_RS16105 0.75 +0.0 3,046,118 - sdhA LU632_RS16105 0.81 +0.0 3,046,118 - sdhA LU632_RS16105 0.81 -0.5 3,046,118 - sdhA LU632_RS16105 0.81 -1.3 3,046,158 - sdhA LU632_RS16105 0.83 +0.0 3,046,158 - sdhA LU632_RS16105 0.83 +0.4 3,046,194 - sdhA LU632_RS16105 0.85 -0.9 3,046,194 - sdhA LU632_RS16105 0.85 -0.2 3,046,199 + sdhA LU632_RS16105 0.85 -1.9 3,046,199 + sdhA LU632_RS16105 0.85 -0.9 3,046,200 - sdhA LU632_RS16105 0.85 +0.0 3,046,200 - sdhA LU632_RS16105 0.85 -0.6 3,046,200 - sdhA LU632_RS16105 0.85 +0.0 3,046,201 + sdhA LU632_RS16105 0.85 -1.0 3,046,248 - sdhA LU632_RS16105 0.88 +1.6 3,046,252 + sdhA LU632_RS16105 0.88 +1.6 3,046,252 + sdhA LU632_RS16105 0.88 -2.0 3,046,482 + -1.6 3,046,483 - +0.0 3,046,483 - +1.5 3,046,505 - sdhD LU632_RS16110 0.12 +0.0 3,046,563 - sdhD LU632_RS16110 0.29 -1.0 3,046,574 - sdhD LU632_RS16110 0.32 -1.0 3,046,574 - sdhD LU632_RS16110 0.32 -1.3 3,046,634 - sdhD LU632_RS16110 0.49 +0.8 3,046,638 + sdhD LU632_RS16110 0.51 +1.6 3,046,672 - sdhD LU632_RS16110 0.60 +0.4 3,046,681 - sdhD LU632_RS16110 0.63 -1.4 3,046,715 + sdhD LU632_RS16110 0.73 +0.0 3,046,715 + sdhD LU632_RS16110 0.73 -0.6 3,046,716 - sdhD LU632_RS16110 0.73 +0.4 3,046,724 + sdhD LU632_RS16110 0.75 -1.2 3,046,724 + sdhD LU632_RS16110 0.75 -1.1 3,046,724 + sdhD LU632_RS16110 0.75 -0.9 3,046,725 - sdhD LU632_RS16110 0.76 -1.6 3,046,726 + sdhD LU632_RS16110 0.76 +0.0 3,046,726 + sdhD LU632_RS16110 0.76 +0.0 3,046,726 + sdhD LU632_RS16110 0.76 -1.0 3,046,727 - sdhD LU632_RS16110 0.76 +2.0 3,046,805 - +1.6 3,046,927 - sdhC LU632_RS16115 0.32 -1.2 3,046,982 + sdhC LU632_RS16115 0.46 -2.3 3,046,988 + sdhC LU632_RS16115 0.47 +0.0 3,046,989 - sdhC LU632_RS16115 0.48 -2.8 3,047,064 + sdhC LU632_RS16115 0.67 -0.9 3,047,064 + sdhC LU632_RS16115 0.67 -1.0 3,047,065 - sdhC LU632_RS16115 0.67 +1.2 3,047,065 - sdhC LU632_RS16115 0.67 +0.4 3,047,065 - sdhC LU632_RS16115 0.67 -0.2 3,047,098 - sdhC LU632_RS16115 0.76 -0.7 3,047,098 - sdhC LU632_RS16115 0.76 -0.6 3,047,247 - -1.6 3,047,248 + -1.2 3,047,266 - +0.3
Or see this region's nucleotide sequence