Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS11810 and LU632_RS11815 overlap by 8 nucleotides LU632_RS11815 and LU632_RS11820 overlap by 1 nucleotides LU632_RS11820 and LU632_RS11825 are separated by 18 nucleotides LU632_RS11825 and LU632_RS11830 overlap by 38 nucleotides LU632_RS11830 and LU632_RS11835 overlap by 23 nucleotides LU632_RS11835 and LU632_RS11840 are separated by 17 nucleotides
LU632_RS11810: LU632_RS11810 - hypothetical protein, at 2,244,459 to 2,244,689
_RS11810
LU632_RS11815: LU632_RS11815 - DUF1804 family protein, at 2,244,682 to 2,245,203
_RS11815
LU632_RS11820: LU632_RS11820 - hypothetical protein, at 2,245,203 to 2,245,451
_RS11820
LU632_RS11825: LU632_RS11825 - hypothetical protein, at 2,245,470 to 2,245,697
_RS11825
LU632_RS11830: LU632_RS11830 - hypothetical protein, at 2,245,660 to 2,246,136
_RS11830
LU632_RS11835: LU632_RS11835 - DUF2644 domain-containing protein, at 2,246,114 to 2,246,365
_RS11835
LU632_RS11840: LU632_RS11840 - lysozyme, at 2,246,383 to 2,246,838
_RS11840
Position (kb)
2245
2246 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2244.580 kb on - strand, within LU632_RS11810 at 2244.589 kb on + strand, within LU632_RS11810 at 2244.590 kb on - strand, within LU632_RS11810 at 2244.590 kb on - strand, within LU632_RS11810 at 2244.605 kb on - strand, within LU632_RS11810 at 2244.605 kb on - strand, within LU632_RS11810 at 2244.605 kb on - strand, within LU632_RS11810 at 2244.607 kb on - strand, within LU632_RS11810 at 2244.675 kb on - strand at 2244.703 kb on + strand at 2244.704 kb on - strand at 2244.704 kb on - strand at 2244.722 kb on - strand at 2244.724 kb on + strand at 2244.724 kb on + strand at 2244.725 kb on - strand at 2244.725 kb on - strand at 2244.756 kb on - strand, within LU632_RS11815 at 2244.759 kb on + strand, within LU632_RS11815 at 2244.893 kb on + strand, within LU632_RS11815 at 2244.894 kb on - strand, within LU632_RS11815 at 2244.966 kb on + strand, within LU632_RS11815 at 2245.160 kb on + strand at 2245.161 kb on - strand at 2245.161 kb on - strand at 2245.161 kb on - strand at 2245.236 kb on + strand, within LU632_RS11820 at 2245.236 kb on + strand, within LU632_RS11820 at 2245.236 kb on + strand, within LU632_RS11820 at 2245.238 kb on + strand, within LU632_RS11820 at 2245.339 kb on + strand, within LU632_RS11820 at 2245.340 kb on - strand, within LU632_RS11820 at 2245.415 kb on + strand, within LU632_RS11820 at 2245.472 kb on - strand at 2245.472 kb on - strand at 2245.606 kb on + strand, within LU632_RS11825 at 2245.662 kb on - strand at 2245.724 kb on + strand, within LU632_RS11830 at 2245.725 kb on - strand, within LU632_RS11830 at 2246.115 kb on + strand at 2246.115 kb on + strand at 2246.115 kb on + strand at 2246.116 kb on - strand at 2246.116 kb on - strand at 2246.369 kb on + strand at 2246.511 kb on + strand, within LU632_RS11840 at 2246.637 kb on - strand, within LU632_RS11840 at 2246.656 kb on + strand, within LU632_RS11840 at 2246.692 kb on - strand, within LU632_RS11840
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 2,244,580 - LU632_RS11810 0.52 -0.4 2,244,589 + LU632_RS11810 0.56 -0.3 2,244,590 - LU632_RS11810 0.57 -1.9 2,244,590 - LU632_RS11810 0.57 -1.3 2,244,605 - LU632_RS11810 0.63 -0.2 2,244,605 - LU632_RS11810 0.63 +0.7 2,244,605 - LU632_RS11810 0.63 -0.5 2,244,607 - LU632_RS11810 0.64 -0.8 2,244,675 - +0.6 2,244,703 + -0.1 2,244,704 - -0.2 2,244,704 - -0.1 2,244,722 - +0.2 2,244,724 + -1.8 2,244,724 + +0.2 2,244,725 - +0.3 2,244,725 - +0.5 2,244,756 - LU632_RS11815 0.14 +1.4 2,244,759 + LU632_RS11815 0.15 -0.6 2,244,893 + LU632_RS11815 0.40 -0.5 2,244,894 - LU632_RS11815 0.41 +1.9 2,244,966 + LU632_RS11815 0.54 +1.5 2,245,160 + +1.7 2,245,161 - -0.1 2,245,161 - -0.9 2,245,161 - -0.3 2,245,236 + LU632_RS11820 0.13 -0.1 2,245,236 + LU632_RS11820 0.13 +0.1 2,245,236 + LU632_RS11820 0.13 +0.8 2,245,238 + LU632_RS11820 0.14 -0.1 2,245,339 + LU632_RS11820 0.55 -1.6 2,245,340 - LU632_RS11820 0.55 +0.6 2,245,415 + LU632_RS11820 0.85 -0.1 2,245,472 - +1.9 2,245,472 - +1.5 2,245,606 + LU632_RS11825 0.60 -0.8 2,245,662 - -0.2 2,245,724 + LU632_RS11830 0.13 -0.2 2,245,725 - LU632_RS11830 0.14 +1.4 2,246,115 + -0.7 2,246,115 + +0.3 2,246,115 + -0.4 2,246,116 - +0.8 2,246,116 - -0.1 2,246,369 + -1.7 2,246,511 + LU632_RS11840 0.28 -0.6 2,246,637 - LU632_RS11840 0.56 -0.5 2,246,656 + LU632_RS11840 0.60 -0.8 2,246,692 - LU632_RS11840 0.68 +0.9
Or see this region's nucleotide sequence