Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10745

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntprmC and sirB1 are separated by 255 nucleotidessirB1 and kdsA are separated by 15 nucleotideskdsA and LU632_RS10755 are separated by 51 nucleotides LU632_RS10740: prmC - peptide chain release factor N(5)-glutamine methyltransferase, at 2,047,721 to 2,048,551 prmC LU632_RS10745: sirB1 - invasion regulator SirB1, at 2,048,807 to 2,049,616 sirB1 LU632_RS10750: kdsA - 3-deoxy-8-phosphooctulonate synthase, at 2,049,632 to 2,050,486 kdsA LU632_RS10755: LU632_RS10755 - META domain-containing protein, at 2,050,538 to 2,051,020 _RS10755 Position (kb) 2048 2049 2050Strain fitness (log2 ratio) -2 -1 0 1at 2048.619 kb on + strandat 2048.619 kb on + strandat 2048.619 kb on + strandat 2048.619 kb on + strandat 2048.624 kb on + strandat 2049.489 kb on + strand, within sirB1at 2049.519 kb on + strand, within sirB1at 2049.604 kb on + strandat 2050.537 kb on + strandat 2050.537 kb on + strandat 2050.537 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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2,048,619 + -0.0
2,048,619 + -0.5
2,048,619 + -1.0
2,048,619 + +0.8
2,048,624 + -0.5
2,049,489 + sirB1 LU632_RS10745 0.84 -2.4
2,049,519 + sirB1 LU632_RS10745 0.88 -0.0
2,049,604 + +1.3
2,050,537 + -0.6
2,050,537 + -0.4
2,050,537 + -1.0

Or see this region's nucleotide sequence