Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdoC and LU632_RS10270 are separated by 215 nucleotides LU632_RS10270 and mdoH overlap by 8 nucleotides
LU632_RS10265: mdoC - glucans biosynthesis protein MdoC, at 1,959,580 to 1,960,704
mdoC
LU632_RS10270: LU632_RS10270 - glucan biosynthesis protein G, at 1,960,920 to 1,962,515
_RS10270
LU632_RS10275: mdoH - glucans biosynthesis glucosyltransferase MdoH, at 1,962,508 to 1,965,075
mdoH
Position (kb) 1960
1961
1962
1963 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1959.987 kb on + strand, within mdoC at 1959.987 kb on + strand, within mdoC at 1959.988 kb on - strand, within mdoC at 1960.010 kb on + strand, within mdoC at 1960.054 kb on + strand, within mdoC at 1960.074 kb on - strand, within mdoC at 1960.074 kb on - strand, within mdoC at 1960.074 kb on - strand, within mdoC at 1960.108 kb on - strand, within mdoC at 1960.111 kb on + strand, within mdoC at 1960.111 kb on + strand, within mdoC at 1960.151 kb on + strand, within mdoC at 1960.178 kb on - strand, within mdoC at 1960.199 kb on + strand, within mdoC at 1960.199 kb on + strand, within mdoC at 1960.308 kb on + strand, within mdoC at 1960.309 kb on - strand, within mdoC at 1960.318 kb on + strand, within mdoC at 1960.409 kb on - strand, within mdoC at 1960.433 kb on - strand, within mdoC at 1960.447 kb on + strand, within mdoC at 1960.470 kb on + strand, within mdoC at 1960.471 kb on - strand, within mdoC at 1960.471 kb on - strand, within mdoC at 1960.491 kb on - strand, within mdoC at 1960.542 kb on + strand, within mdoC at 1960.558 kb on - strand, within mdoC at 1960.652 kb on + strand at 1960.652 kb on + strand at 1960.653 kb on - strand at 1960.705 kb on - strand at 1960.774 kb on + strand at 1960.792 kb on + strand at 1960.792 kb on + strand at 1960.792 kb on + strand at 1960.792 kb on + strand at 1960.792 kb on + strand at 1960.793 kb on - strand at 1960.793 kb on - strand at 1960.793 kb on - strand at 1960.793 kb on - strand at 1960.793 kb on - strand at 1960.793 kb on - strand at 1960.794 kb on + strand at 1960.798 kb on - strand at 1960.819 kb on + strand at 1960.819 kb on + strand at 1960.823 kb on + strand at 1960.824 kb on - strand at 1960.872 kb on - strand at 1961.239 kb on - strand, within LU632_RS10270 at 1961.735 kb on + strand, within LU632_RS10270 at 1962.117 kb on + strand, within LU632_RS10270 at 1962.118 kb on - strand, within LU632_RS10270 at 1962.212 kb on + strand, within LU632_RS10270 at 1962.216 kb on - strand, within LU632_RS10270 at 1962.401 kb on + strand at 1962.492 kb on + strand at 1962.538 kb on + strand at 1962.538 kb on + strand at 1963.102 kb on + strand, within mdoH at 1963.103 kb on - strand, within mdoH at 1963.103 kb on - strand, within mdoH at 1963.216 kb on + strand, within mdoH at 1963.217 kb on - strand, within mdoH at 1963.221 kb on + strand, within mdoH at 1963.254 kb on + strand, within mdoH at 1963.400 kb on - strand, within mdoH
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,959,987 + mdoC LU632_RS10265 0.36 -1.0 1,959,987 + mdoC LU632_RS10265 0.36 +0.1 1,959,988 - mdoC LU632_RS10265 0.36 +0.7 1,960,010 + mdoC LU632_RS10265 0.38 -1.1 1,960,054 + mdoC LU632_RS10265 0.42 -0.0 1,960,074 - mdoC LU632_RS10265 0.44 +0.4 1,960,074 - mdoC LU632_RS10265 0.44 -0.5 1,960,074 - mdoC LU632_RS10265 0.44 -0.0 1,960,108 - mdoC LU632_RS10265 0.47 +0.4 1,960,111 + mdoC LU632_RS10265 0.47 -0.0 1,960,111 + mdoC LU632_RS10265 0.47 -1.4 1,960,151 + mdoC LU632_RS10265 0.51 -0.0 1,960,178 - mdoC LU632_RS10265 0.53 -0.2 1,960,199 + mdoC LU632_RS10265 0.55 +1.0 1,960,199 + mdoC LU632_RS10265 0.55 -0.6 1,960,308 + mdoC LU632_RS10265 0.65 -1.0 1,960,309 - mdoC LU632_RS10265 0.65 -0.3 1,960,318 + mdoC LU632_RS10265 0.66 -0.3 1,960,409 - mdoC LU632_RS10265 0.74 -1.0 1,960,433 - mdoC LU632_RS10265 0.76 -1.6 1,960,447 + mdoC LU632_RS10265 0.77 -0.6 1,960,470 + mdoC LU632_RS10265 0.79 +1.5 1,960,471 - mdoC LU632_RS10265 0.79 -1.0 1,960,471 - mdoC LU632_RS10265 0.79 +1.2 1,960,491 - mdoC LU632_RS10265 0.81 -1.0 1,960,542 + mdoC LU632_RS10265 0.86 -0.3 1,960,558 - mdoC LU632_RS10265 0.87 -0.4 1,960,652 + -0.0 1,960,652 + +0.4 1,960,653 - +1.0 1,960,705 - -0.0 1,960,774 + -0.7 1,960,792 + -0.0 1,960,792 + -0.8 1,960,792 + -0.4 1,960,792 + -1.0 1,960,792 + +1.0 1,960,793 - +0.4 1,960,793 - -1.0 1,960,793 - -1.0 1,960,793 - -1.6 1,960,793 - -0.3 1,960,793 - +0.7 1,960,794 + -0.5 1,960,798 - -1.8 1,960,819 + +0.1 1,960,819 + +0.2 1,960,823 + -0.5 1,960,824 - -1.0 1,960,872 - -0.9 1,961,239 - LU632_RS10270 0.20 -0.5 1,961,735 + LU632_RS10270 0.51 -0.7 1,962,117 + LU632_RS10270 0.75 -0.8 1,962,118 - LU632_RS10270 0.75 +1.0 1,962,212 + LU632_RS10270 0.81 -0.4 1,962,216 - LU632_RS10270 0.81 -2.0 1,962,401 + -0.9 1,962,492 + -1.3 1,962,538 + -0.5 1,962,538 + -0.8 1,963,102 + mdoH LU632_RS10275 0.23 -2.0 1,963,103 - mdoH LU632_RS10275 0.23 +0.5 1,963,103 - mdoH LU632_RS10275 0.23 -0.0 1,963,216 + mdoH LU632_RS10275 0.28 -0.4 1,963,217 - mdoH LU632_RS10275 0.28 -2.8 1,963,221 + mdoH LU632_RS10275 0.28 -1.8 1,963,254 + mdoH LU632_RS10275 0.29 -1.0 1,963,400 - mdoH LU632_RS10275 0.35 -1.4
Or see this region's nucleotide sequence