Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS09080 and pgl are separated by 147 nucleotides pgl and LU632_RS09090 are separated by 43 nucleotides LU632_RS09090 and LU632_RS09095 are separated by 15 nucleotides
LU632_RS09080: LU632_RS09080 - pyridoxal phosphatase, at 1,707,883 to 1,708,701
_RS09080
LU632_RS09085: pgl - 6-phosphogluconolactonase, at 1,708,849 to 1,709,844
pgl
LU632_RS09090: LU632_RS09090 - kinase inhibitor, at 1,709,888 to 1,710,376
_RS09090
LU632_RS09095: LU632_RS09095 - type 1 glutamine amidotransferase domain-containing protein, at 1,710,392 to 1,711,072
_RS09095
Position (kb) 1708
1709
1710 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1707.899 kb on + strand at 1708.028 kb on + strand, within LU632_RS09080 at 1708.028 kb on - strand, within LU632_RS09080 at 1708.029 kb on - strand, within LU632_RS09080 at 1708.032 kb on + strand, within LU632_RS09080 at 1708.177 kb on + strand, within LU632_RS09080 at 1708.177 kb on + strand, within LU632_RS09080 at 1708.177 kb on + strand, within LU632_RS09080 at 1708.177 kb on + strand, within LU632_RS09080 at 1708.178 kb on - strand, within LU632_RS09080 at 1708.178 kb on - strand, within LU632_RS09080 at 1708.178 kb on - strand, within LU632_RS09080 at 1708.242 kb on + strand, within LU632_RS09080 at 1708.242 kb on + strand, within LU632_RS09080 at 1708.329 kb on + strand, within LU632_RS09080 at 1708.383 kb on - strand, within LU632_RS09080 at 1708.383 kb on - strand, within LU632_RS09080 at 1708.582 kb on - strand, within LU632_RS09080 at 1708.582 kb on - strand, within LU632_RS09080 at 1708.741 kb on + strand at 1708.742 kb on - strand at 1708.827 kb on + strand at 1708.864 kb on + strand at 1708.909 kb on - strand at 1708.999 kb on + strand, within pgl at 1709.035 kb on + strand, within pgl at 1709.036 kb on - strand, within pgl at 1709.038 kb on - strand, within pgl at 1709.103 kb on + strand, within pgl at 1709.420 kb on - strand, within pgl at 1709.420 kb on - strand, within pgl at 1709.859 kb on - strand at 1709.907 kb on + strand at 1709.950 kb on + strand, within LU632_RS09090 at 1709.953 kb on + strand, within LU632_RS09090 at 1709.964 kb on + strand, within LU632_RS09090 at 1710.016 kb on - strand, within LU632_RS09090 at 1710.028 kb on + strand, within LU632_RS09090 at 1710.030 kb on + strand, within LU632_RS09090 at 1710.102 kb on - strand, within LU632_RS09090 at 1710.176 kb on - strand, within LU632_RS09090 at 1710.176 kb on - strand, within LU632_RS09090 at 1710.176 kb on - strand, within LU632_RS09090 at 1710.180 kb on - strand, within LU632_RS09090 at 1710.180 kb on - strand, within LU632_RS09090 at 1710.180 kb on - strand, within LU632_RS09090 at 1710.364 kb on + strand at 1710.589 kb on + strand, within LU632_RS09095 at 1710.590 kb on - strand, within LU632_RS09095 at 1710.706 kb on - strand, within LU632_RS09095
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,707,899 + -1.0 1,708,028 + LU632_RS09080 0.18 +1.2 1,708,028 - LU632_RS09080 0.18 +0.0 1,708,029 - LU632_RS09080 0.18 +1.0 1,708,032 + LU632_RS09080 0.18 +1.0 1,708,177 + LU632_RS09080 0.36 +0.1 1,708,177 + LU632_RS09080 0.36 +0.4 1,708,177 + LU632_RS09080 0.36 +0.0 1,708,177 + LU632_RS09080 0.36 +0.7 1,708,178 - LU632_RS09080 0.36 +0.3 1,708,178 - LU632_RS09080 0.36 -2.0 1,708,178 - LU632_RS09080 0.36 +0.3 1,708,242 + LU632_RS09080 0.44 +1.0 1,708,242 + LU632_RS09080 0.44 -0.3 1,708,329 + LU632_RS09080 0.54 +0.4 1,708,383 - LU632_RS09080 0.61 -2.3 1,708,383 - LU632_RS09080 0.61 -1.1 1,708,582 - LU632_RS09080 0.85 +0.2 1,708,582 - LU632_RS09080 0.85 -1.3 1,708,741 + -0.6 1,708,742 - +0.0 1,708,827 + +1.0 1,708,864 + -1.3 1,708,909 - +0.0 1,708,999 + pgl LU632_RS09085 0.15 -1.0 1,709,035 + pgl LU632_RS09085 0.19 -1.0 1,709,036 - pgl LU632_RS09085 0.19 -1.0 1,709,038 - pgl LU632_RS09085 0.19 +0.0 1,709,103 + pgl LU632_RS09085 0.26 -1.0 1,709,420 - pgl LU632_RS09085 0.57 -0.3 1,709,420 - pgl LU632_RS09085 0.57 -0.6 1,709,859 - +0.7 1,709,907 + +0.0 1,709,950 + LU632_RS09090 0.13 +0.0 1,709,953 + LU632_RS09090 0.13 -0.7 1,709,964 + LU632_RS09090 0.16 -0.5 1,710,016 - LU632_RS09090 0.26 -0.3 1,710,028 + LU632_RS09090 0.29 +1.0 1,710,030 + LU632_RS09090 0.29 -0.6 1,710,102 - LU632_RS09090 0.44 +2.8 1,710,176 - LU632_RS09090 0.59 -0.1 1,710,176 - LU632_RS09090 0.59 -0.7 1,710,176 - LU632_RS09090 0.59 +1.0 1,710,180 - LU632_RS09090 0.60 -0.7 1,710,180 - LU632_RS09090 0.60 -0.2 1,710,180 - LU632_RS09090 0.60 +0.0 1,710,364 + +1.6 1,710,589 + LU632_RS09095 0.29 +1.0 1,710,590 - LU632_RS09095 0.29 -0.2 1,710,706 - LU632_RS09095 0.46 -1.0
Or see this region's nucleotide sequence